| 1 |
#! /bin/bash |
| 2 |
|
| 3 |
# mlovccf (make list of valid ccfs) |
| 4 |
# |
| 5 |
# Makes the list of valid CCFs. These are all CCFs, among those published since the |
| 6 |
# beginning of the project, that are required to process any ODF at a given date, |
| 7 |
# typically the current date. This list will change with time as far as new |
| 8 |
# CCFs are issued to deal with new calibration data and/or replace obsolete ones. |
| 9 |
# |
| 10 |
# To identify the set of CCFs required to process a given ODF is the job of task cifbuild. |
| 11 |
# To make such identification, cifbuild needs only the start time of the observation. |
| 12 |
# Therefore, if we provide a list of all observed ODFs at a given date together with their |
| 13 |
# respective start time, we could compute all the CCFs required to process them. |
| 14 |
# For such a moment, that list is the list of valid CCFs required to process |
| 15 |
# any observed ODF. |
| 16 |
# |
| 17 |
# We need as input the list of all observed ODFs at a given date. |
| 18 |
# This is obtained from the report of all observations that the XSA makes to CDS, |
| 19 |
# xsaobslog.txt (http://nxsa.esac.esa.int/ftp_public/cfs_obslog/xsaobslog.txt). |
| 20 |
# |
| 21 |
# $Id: mlovccf,v 1.12 2016/03/23 15:36:37 ccflib Exp $ |
| 22 |
|
| 23 |
# Next two lines allow to submit this script to the grid |
| 24 |
# request Bourne shell as shell for job |
| 25 |
#$ -S /bin/bash |
| 26 |
|
| 27 |
adminmail="eduardo.ojero@esa.int" |
| 28 |
|
| 29 |
VALID_CCF="$HOME/valid_ccf" |
| 30 |
|
| 31 |
mailfile="${VALID_CCF}/mailfile" |
| 32 |
|
| 33 |
host=`hostname | cut -d. -f1` |
| 34 |
|
| 35 |
now=`date +'%Y%m%d_%H%M'` |
| 36 |
now_table=`date +'%Y-%m-%dT%H:%M:%S'` |
| 37 |
|
| 38 |
|
| 39 |
# +++ Function mailnotify |
| 40 |
# |
| 41 |
# This function is used to notify adminmail on any issue while runnning this procedure |
| 42 |
# |
| 43 |
# Needs a subject as $1 and body as local file to be send. |
| 44 |
|
| 45 |
mailnotify () |
| 46 |
{ |
| 47 |
|
| 48 |
[ "$#" -ne "2" ] && return |
| 49 |
|
| 50 |
subject=$1 |
| 51 |
|
| 52 |
bodyfile=$2 |
| 53 |
|
| 54 |
[ ! -f "${bodyfile}" ] && return |
| 55 |
|
| 56 |
mailx -s "${subject}" "${adminuser}" < ${bodyfile} |
| 57 |
|
| 58 |
} |
| 59 |
|
| 60 |
|
| 61 |
|
| 62 |
# +++ Function getxsaobslog |
| 63 |
# |
| 64 |
# We need to get the list of all observed ODFs at the current date. |
| 65 |
# This is obtained from http://nxsa.esac.esa.int/ftp_public/cds_obslog/xsaobslog.txt. |
| 66 |
|
| 67 |
getxsaobslog () |
| 68 |
{ |
| 69 |
|
| 70 |
XSAOBSURL="http://nxsa.esac.esa.int/ftp_public/cds_obslog/xsaobslog.txt" |
| 71 |
|
| 72 |
# Remove any xsaobslog.txt previously downloaded. |
| 73 |
|
| 74 |
[ -f "${VALID_CCF}/xsaobslog.txt" ] && rm -rf ${VALID_CCF}/xsaobslog.txt |
| 75 |
|
| 76 |
# Get the list latest list of ODFs available from nXSA server. |
| 77 |
|
| 78 |
wget -q ${XSAOBSURL} -O ${VALID_CCF}/xsaobslog.txt |
| 79 |
|
| 80 |
# Rename xsaobslog.txt to xsaobslog_${now}.txt just to have a reference |
| 81 |
# of which list of ODFs was used to compute the list of valid CCFs. |
| 82 |
|
| 83 |
mv ${VALID_CCF}/xsaobslog.txt ${VALID_CCF}/xsaobslog_${now}.txt |
| 84 |
|
| 85 |
} |
| 86 |
|
| 87 |
|
| 88 |
|
| 89 |
# +++ Function find_latest_mif to get the latest XMM_CALINDEX from given directory |
| 90 |
|
| 91 |
find_latest_mif() |
| 92 |
{ |
| 93 |
|
| 94 |
[ -z "$1" ] && return |
| 95 |
|
| 96 |
CCFPATH="$1" |
| 97 |
|
| 98 |
maxissue="0" |
| 99 |
for mif in `ls -1 ${CCFPATH}/XMM_CALINDEX_*.CCF` |
| 100 |
do |
| 101 |
mifbase=`basename $mif` |
| 102 |
issue=`echo $mifbase | awk -F"." '{print $1}' | awk -F"_" '{print $3}'` |
| 103 |
[ "$issue" -ge "$maxissue" ] && maxissue="$issue" |
| 104 |
done |
| 105 |
|
| 106 |
MIF=${CCFPATH}/XMM_CALINDEX_${maxissue}.CCF |
| 107 |
|
| 108 |
} |
| 109 |
|
| 110 |
|
| 111 |
|
| 112 |
# +++Function get_ccf_list to list on stdout the table of CCFs in a given CIF. |
| 113 |
# |
| 114 |
# Requires that Heasoft is initialised. Otherwise exits with error. |
| 115 |
|
| 116 |
get_ccf_list() |
| 117 |
{ |
| 118 |
[ -z "$1" ] && return |
| 119 |
|
| 120 |
cif_to_process="$1" |
| 121 |
|
| 122 |
noversion=`which fversion | grep -c no` |
| 123 |
|
| 124 |
if [ "${noversion}" != "0" ] ; then |
| 125 |
echo "Error: Heasoft not initialised !" |
| 126 |
[ -f "${mailfile}" ] && rm -rf ${mailfile} |
| 127 |
echo "Running of fversion produced the following output:" >> $mailfile |
| 128 |
echo "$noversion" >> $mailfile |
| 129 |
mailnotify "mvloccf: Error: Heasoft not initialised!" $mailfile |
| 130 |
rm ${mailfile} |
| 131 |
exit |
| 132 |
fi |
| 133 |
|
| 134 |
fdump ${cif_to_process} prhead=no showcol=no showrow=no page=no \ |
| 135 |
columns="SCOPE TYPEID ISSUE" \ |
| 136 |
rows=- STDOUT |
| 137 |
} |
| 138 |
|
| 139 |
|
| 140 |
|
| 141 |
|
| 142 |
# +++ Fill in the valid_constituents directory with the Valid CCF set |
| 143 |
# |
| 144 |
# The directory to be filled in is ${VALIDCONSTITUENTSDISR}. |
| 145 |
# This directory is synchronized with the similar directory in the |
| 146 |
# external ftp server. |
| 147 |
# |
| 148 |
# In addition to that, we also use this function to fill in the |
| 149 |
# /ccf/valid directory available for users in the intranet. |
| 150 |
|
| 151 |
fillvalidccfdir() |
| 152 |
{ |
| 153 |
|
| 154 |
[ -z "$1" ] && return |
| 155 |
|
| 156 |
validccflist=$1 |
| 157 |
|
| 158 |
if [ ! -f "${VALID_CCF}/${validccflist}" ] ; then |
| 159 |
echo "Error: ${VALID_CCF}/${validccflist} not found - Abort!" |
| 160 |
[ -f "${mailfile}" ] && rm -rf ${mailfile} |
| 161 |
echo "The list of valid CCF ${VALID_CCF}/${validccflist} is not found" >> $mailfile |
| 162 |
mailnotify "mvloccf: Error: ${VALID_CCF}/${validccflist} not found - Abort!" $mailfile |
| 163 |
rm ${mailfile} |
| 164 |
exit |
| 165 |
fi |
| 166 |
|
| 167 |
VALIDCONSTITUENTSDIR="/home/ccflib/ftp-area/valid_constituents" |
| 168 |
rm -rf ${VALIDCONSTITUENTSDIR}/* |
| 169 |
|
| 170 |
VALIDCCFDIRINTRANET="/ccf/valid" |
| 171 |
rm -rf ${VALIDCCFDIRINTRANET}/* |
| 172 |
|
| 173 |
CONSTITUENTSDIR="/home/ccflib/ftp-area/constituents" |
| 174 |
n=0 |
| 175 |
while read ccf |
| 176 |
do |
| 177 |
n=$((n + 1)) |
| 178 |
echo "$n cp -a ${CONSTITUENTSDIR}/${ccf} ${VALIDCONSTITUENTSDIR}/" |
| 179 |
cp -a ${CONSTITUENTSDIR}/${ccf} ${VALIDCONSTITUENTSDIR}/ |
| 180 |
echo "$n cp -a ${CONSTITUENTSDIR}/${ccf} ${VALIDCCFDIRINTRANET}/" |
| 181 |
cp -a ${CONSTITUENTSDIR}/${ccf} ${VALIDCCFDIRINTRANET}/ |
| 182 |
done < ${VALID_CCF}/${validccflist} |
| 183 |
|
| 184 |
} |
| 185 |
|
| 186 |
|
| 187 |
# |
| 188 |
# M a i n p r o g r a m |
| 189 |
# |
| 190 |
# 1. Get the list of all ODFs |
| 191 |
|
| 192 |
|
| 193 |
xsaobslogsize="0" |
| 194 |
|
| 195 |
getxsaobslog |
| 196 |
|
| 197 |
xsaobslogsize=`stat --format=%s ${VALID_CCF}/xsaobslog_${now}.txt` |
| 198 |
|
| 199 |
if [ "$xsaobslogsize" = "0" ] ; then |
| 200 |
echo "Error: Failure to download the XSA Obs. Log file - Abort" |
| 201 |
[ -f "${mailfile}" ] && rm -rf ${mailfile} |
| 202 |
echo "The XSA Obs. Log file has 0 size - Not downloaded?" >> $mailfile |
| 203 |
echo "." >> $mailfile |
| 204 |
mailnotify "mlovccf: Error: Failure to download the XSA Obs. Log file - Abort" "$mailfile" |
| 205 |
rm ${mailfile} |
| 206 |
exit |
| 207 |
fi |
| 208 |
|
| 209 |
# 2. Sets SAS_CCFPATH and initialises HEADAS and SAS depending on host |
| 210 |
|
| 211 |
case "$host" in |
| 212 |
xvsoc01|xmm) |
| 213 |
export SAS_CCFPATH="/data/xmm/ccflib/ftp-area/constituents" |
| 214 |
export SAS_DIR=/data/xmm/ccflib/sas |
| 215 |
export SAS_PATH=$SAS_DIR |
| 216 |
source $SAS_DIR/sas-setup.sh |
| 217 |
;; |
| 218 |
sasbld01|sasbld02) |
| 219 |
export SAS_CCFPATH="/home/ccflib/ftp-area/constituents" |
| 220 |
/sas/bin/confsas |
| 221 |
export HEADAS=/sasbuild/local/${host}/headas/architecture |
| 222 |
. $HEADAS/headas-init.sh |
| 223 |
# To be able to mix several jobs on the same ccflib account |
| 224 |
[ ! -d "${HOME}/pfiles/${host}" ] && mkdir ${HOME}/pfiles/${host} |
| 225 |
export PFILES="${HOME}/pfiles/${host};${HEADAS}/syspfiles" |
| 226 |
echo -n "HEADAS version: " |
| 227 |
fversion |
| 228 |
source $HOME/setsas.sh 1> /dev/null |
| 229 |
echo "SAS Version: " |
| 230 |
sasversion -V 1 |
| 231 |
export SAS_VERBOSITY=0 |
| 232 |
;; |
| 233 |
scigrid6|cn-*) |
| 234 |
export SAS_CCFPATH="/home/ccflib/ftp-area/constituents" |
| 235 |
/sas/bin/confsas |
| 236 |
export HEADAS=/sasbuild/local/sasbld02/headas/architecture |
| 237 |
. $HEADAS/headas-init.sh |
| 238 |
# To be able to mix several jobs on the same ccflib account |
| 239 |
[ ! -d "${HOME}/pfiles/${host}" ] && mkdir ${HOME}/pfiles/${host} |
| 240 |
export PFILES="${HOME}/pfiles/${host};${HEADAS}/syspfiles" |
| 241 |
echo -n "HEADAS version: " |
| 242 |
fversion |
| 243 |
source $HOME/setsas.sh 1> /dev/null |
| 244 |
echo "SAS Version: " |
| 245 |
sasversion -V 1 |
| 246 |
export SAS_VERBOSITY=0 |
| 247 |
;; |
| 248 |
*) echo "Error: Do not know how to do it in host $host" ; exit ;; |
| 249 |
esac |
| 250 |
|
| 251 |
# 3. Finds the latest MIF issue |
| 252 |
|
| 253 |
find_latest_mif "${SAS_CCFPATH}" |
| 254 |
|
| 255 |
|
| 256 |
# 4. Scans the list of OBDS ID registered in the previous list to get the start time |
| 257 |
# Then runs cifbuild to get the respective CIF. |
| 258 |
# all_ccfs_${now}.txt is filled recursively on each iteration. Therefore we start |
| 259 |
# with an empty file. |
| 260 |
|
| 261 |
# Output file : ${VALID_CCF}/all_ccfs_${now}.txt |
| 262 |
|
| 263 |
touch ${VALID_CCF}/all_ccfs_${now}.txt |
| 264 |
|
| 265 |
n=0 |
| 266 |
|
| 267 |
while read line |
| 268 |
do |
| 269 |
obsid=`echo $line | awk -F"|" '{print $2}'` |
| 270 |
stime=`echo $line | awk -F"|" '{print $9}'` |
| 271 |
stime=`echo $stime | tr " " "T"` |
| 272 |
n=$((n+1)) |
| 273 |
echo "($n) Processing $obsid $stime" ; echo |
| 274 |
|
| 275 |
# Run cifbuild |
| 276 |
|
| 277 |
cif_file=${VALID_CCF}/${obsid}.cif |
| 278 |
|
| 279 |
cifbuild --withmasterindexset='yes' \ |
| 280 |
--masterindexset=${MIF} \ |
| 281 |
--withobservationdate='yes' \ |
| 282 |
--observationdate=${stime} \ |
| 283 |
--analysisdate='now' \ |
| 284 |
--calindexset=${cif_file} |
| 285 |
|
| 286 |
|
| 287 |
# Gets the list of CCFs included in the CIF |
| 288 |
|
| 289 |
get_ccf_list "${cif_file}" > ${VALID_CCF}/${obsid}_ccfs.tmp |
| 290 |
|
| 291 |
while read line |
| 292 |
do |
| 293 |
[ "$line" = "" ] && continue |
| 294 |
class=`echo $line | awk -F" " '{print $1"_"$2}'` |
| 295 |
issue=`echo $line | awk -F" " '{print $3}'` |
| 296 |
issue=`printf "%04d" ${issue}` |
| 297 |
echo ${class}_${issue}.CCF >> ${VALID_CCF}/${obsid}_ccfs.txt |
| 298 |
|
| 299 |
done < ${VALID_CCF}/${obsid}_ccfs.tmp |
| 300 |
|
| 301 |
rm ${VALID_CCF}/${obsid}_ccfs.tmp |
| 302 |
|
| 303 |
mv ${VALID_CCF}/all_ccfs_${now}.txt ${VALID_CCF}/all_ccfs_${now}.tmp |
| 304 |
|
| 305 |
cat ${VALID_CCF}/${obsid}_ccfs.txt ${VALID_CCF}/all_ccfs_${now}.tmp | sort -u > ${VALID_CCF}/all_ccfs_${now}.txt |
| 306 |
|
| 307 |
rm ${cif_file} |
| 308 |
rm ${VALID_CCF}/${obsid}_ccfs.txt |
| 309 |
rm ${VALID_CCF}/all_ccfs_${now}.tmp |
| 310 |
|
| 311 |
done < ${VALID_CCF}/xsaobslog_${now}.txt |
| 312 |
|
| 313 |
# 5. Make a table of classes and issues with the style "Pipeline Release Notes" |
| 314 |
# To get a classification, we need first to obtain all available classes. |
| 315 |
# |
| 316 |
|
| 317 |
|
| 318 |
# Lists all CCF classes |
| 319 |
|
| 320 |
ccf_classes="${VALID_CCF}/ccf_classes.txt" |
| 321 |
|
| 322 |
while read line |
| 323 |
do |
| 324 |
class=`echo $line | awk -F"_" '{print $1"_"$2}'` |
| 325 |
echo $class >> ${ccf_classes} |
| 326 |
done < ${VALID_CCF}/all_ccfs_${now}.txt |
| 327 |
|
| 328 |
cat ${ccf_classes} | sort -u > ${VALID_CCF}/kk.txt |
| 329 |
mv ${VALID_CCF}/kk.txt ${ccf_classes} |
| 330 |
|
| 331 |
|
| 332 |
|
| 333 |
# Output final file is named all_ccfs_${now}_table.txt |
| 334 |
|
| 335 |
total_number_of_ccfs=0 |
| 336 |
|
| 337 |
all_ccfs_table="${VALID_CCF}/all_ccfs_${now}_table.txt" |
| 338 |
|
| 339 |
[ -f "${all_ccfs_table}" ] && rm ${all_ccfs_table} |
| 340 |
|
| 341 |
echo "Table of valid CCFs at $now_table" >> ${all_ccfs_table} |
| 342 |
echo >> ${all_ccfs_table} |
| 343 |
echo "|================================|=============|=======|" >> ${all_ccfs_table} |
| 344 |
echo "| Calibration File | Issue range | Count |" >> ${all_ccfs_table} |
| 345 |
echo "|================================|=============|=======|" >> ${all_ccfs_table} |
| 346 |
|
| 347 |
while read ccf_class |
| 348 |
do |
| 349 |
echo -n "Processing class $ccf_class ..." |
| 350 |
issues_file="${VALID_CCF}/ccf_issues_for_${ccf_class}.txt" |
| 351 |
[ -f "${issues_file}" ] && rm ${issues_file} |
| 352 |
while read line |
| 353 |
do |
| 354 |
class=`echo $line | awk -F"_" '{print $1"_"$2}'` |
| 355 |
[ "$class" != "$ccf_class" ] && continue |
| 356 |
issue=`echo $line | awk -F"_" '{print $3}' | cut -d. -f1` |
| 357 |
echo $issue >> ${issues_file} |
| 358 |
done < ${VALID_CCF}/all_ccfs_${now}.txt |
| 359 |
|
| 360 |
cat ${issues_file} | sort -u > kk.txt |
| 361 |
mv kk.txt ${issues_file} |
| 362 |
real_number_of_issues_for_this_class=`wc -l ${issues_file} | awk -F" " '{print $1}'` |
| 363 |
|
| 364 |
first_issue=`head -1 ${issues_file}` |
| 365 |
last_issue=`tail -1 ${issues_file}` |
| 366 |
|
| 367 |
li=$((10#$last_issue)) |
| 368 |
fi=$((10#$first_issue)) |
| 369 |
|
| 370 |
sequential_number_of_issues_for_this_class=$((li - fi + 1)) |
| 371 |
|
| 372 |
asterisk=" " |
| 373 |
[ "${real_number_of_issues_for_this_class}" -lt "${sequential_number_of_issues_for_this_class}" ] && asterisk="(*)" |
| 374 |
|
| 375 |
total_number_of_ccfs=$((real_number_of_issues_for_this_class + total_number_of_ccfs)) |
| 376 |
|
| 377 |
rn=$real_number_of_issues_for_this_class |
| 378 |
|
| 379 |
if [ "${first_issue}" != "${last_issue}" ] ; then |
| 380 |
if [ "$asterisk" = "(*)" ] ; then |
| 381 |
printf "| %-30s | %4s-%4s(*)| %4s |\n" ${ccf_class} ${first_issue} ${last_issue} ${rn} >> ${all_ccfs_table} |
| 382 |
else |
| 383 |
printf "| %-30s | %4s-%4s | %4s |\n" ${ccf_class} ${first_issue} ${last_issue} ${rn} >> ${all_ccfs_table} |
| 384 |
fi |
| 385 |
else |
| 386 |
printf "| %-30s | %4s | %4s |\n" ${ccf_class} ${first_issue} ${rn} >> ${all_ccfs_table} |
| 387 |
fi |
| 388 |
|
| 389 |
|
| 390 |
echo "done" |
| 391 |
done < ${ccf_classes} |
| 392 |
|
| 393 |
echo "|================================|=============|=======|" >> ${all_ccfs_table} |
| 394 |
echo >> ${all_ccfs_table} |
| 395 |
echo "(*): Incomplete range." >> ${all_ccfs_table} |
| 396 |
echo "" >> ${all_ccfs_table} |
| 397 |
echo "Total number of valid CCFs required : ${total_number_of_ccfs}" >> ${all_ccfs_table} |
| 398 |
rm ${VALID_CCF}/ccf_classes.txt |
| 399 |
rm ${VALID_CCF}/ccf_issues_for*.txt |
| 400 |
|
| 401 |
|
| 402 |
|
| 403 |
# 6. Fill in the Valid CCF Set dir with the proper CCFs |
| 404 |
|
| 405 |
fillvalidccfdir "all_ccfs_${now}.txt" |
| 406 |
|
| 407 |
[ -f "${mailfile}" ] && rm -rf ${mailfile} |
| 408 |
echo "Valid CCF Set successfully copied to ${VALIDCONSTITUENTSDIR}" >> $mailfile |
| 409 |
echo "Valid CCF Set successfully copied to ${VALIDCCFDIRINTRANET}" >> $mailfile |
| 410 |
mailnotify "mvloccf: Valid CCF Set created successfully" $mailfile |
| 411 |
rm ${mailfile} |
Parent Directory
| 
Revision Log