Annotation of /bin/mlovccf

#! /bin/bash

# mlovccf (make list of valid ccfs)
#
# Makes the list of valid CCFs. These are all CCFs, among those published since the 
# beginning of the project, that are required to process any ODF at a given date,
# typically the current date. This list will change with time as far as new
# CCFs are issued to deal with new calibration data and/or replace obsolete ones. 
#
# To identify the set of CCFs required to process a given ODF is the job of task cifbuild. 
# To make such identification, cifbuild needs only the start time of the observation. 
# Therefore, if we provide a list of all observed ODFs at a given date together with their
# respective start time, we could compute all the CCFs required to process them.
# For such a moment, that list is the list of valid CCFs required to process 
# any observed ODF. 
#
# We need as input the list of all observed ODFs at a given date.
# This is obtained from the report of all observations that the XSA makes to CDS,
# xsaobslog.txt (http://nxsa.esac.esa.int/ftp_public/cfs_obslog/xsaobslog.txt). 
#
# $Id: mlovccf,v 1.19 2017/01/10 16:43:39 ccflib Exp $

# Next two lines allow to submit this script to the grid
# request Bourne shell as shell for job
#$ -S /bin/bash

adminmail="eduardo.ojero@sciops.esa.int"

VALID_CCF="$HOME/processing_valid_ccf"

mailfile="${VALID_CCF}/mailfile"

host=`hostname | cut -d. -f1`

now=`date +'%Y%m%d_%H%M'`
now_table=`date +'%Y-%m-%dT%H:%M:%S'`


# +++ Function mailnotify
#
# This function is used to notify adminmail on any issue while runnning this procedure
#
# Needs a subject as $1 and body as local file to be send.

mailnotify ()
{

[ "$#" -ne "2" ] && return

subject=$1 

bodyfile=$2

[ ! -f "${bodyfile}" ] && return 

echo ; echo "Sending message to ${adminmail} with subject ${subject}" ; echo

mailx -v -s "${subject}" "${adminmail}" < ${bodyfile}

}


# +++ Function getxsaobslog
#
# We need to get the list of all observed ODFs at the current date. 
# This is obtained from http://nxsa.esac.esa.int/ftp_public/cds_obslog/xsaobslog.txt.

getxsaobslog ()
{

XSAOBSURL="http://nxsa.esac.esa.int/ftp_public/cds_obslog/xsaobslog.txt"

# Remove any xsaobslog.txt previously downloaded. 

[ -f "${VALID_CCF}/xsaobslog.txt" ] && rm -rf ${VALID_CCF}/xsaobslog.txt

# Get the list latest list of ODFs available from nXSA server.
 
wget --quiet ${XSAOBSURL} -O ${VALID_CCF}/xsaobslog.txt 

# Rename xsaobslog.txt to xsaobslog_${now}.txt just to have a reference 
# of which list of ODFs was used to compute the list of valid CCFs.

mv ${VALID_CCF}/xsaobslog.txt ${VALID_CCF}/xsaobslog_${now}.txt

}


# +++Function get_ccf_list to list on stdout the table of CCFs in a given CIF.
#
# Requires that Heasoft is initialised. Otherwise exits with error.

get_ccf_list()
{
[ -z "$1" ] && return

cif_to_process="$1"

noversion=`which fversion | grep -c no`

if [ "${noversion}" != "0" ] ; then 
        echo "Error: Heasoft not initialised !"
        [ -f "${mailfile}" ] && rm -rf ${mailfile}
        echo "Running of fversion produced the following output:" >> $mailfile
        echo "$noversion" >> $mailfile
        mailnotify "mvloccf: Error: Heasoft not initialised!" $mailfile
        rm ${mailfile}
        exit
fi

fdump ${cif_to_process} prhead=no showcol=no showrow=no page=no \
                        columns="SCOPE TYPEID ISSUE"            \
                        rows=-  STDOUT  
}


# +++ Fill in the valid_constituents directory with the Valid CCF set
#
# The directory to be filled in is ${VALIDCONSTITUENTSDISR}. 
# This directory is synchronized with the similar directory in the 
# external ftp server.
#
# In addition to that, we also use this function to fill in the 
# /ccf/valid directory available for users in the intranet.

fillvalidccfdir()
{

[ -z "$1" ] && return

validccflist=$1

if [ ! -f "${VALID_CCF}/${validccflist}"  ] ; then
        echo "Error: ${VALID_CCF}/${validccflist} not found - Abort!" 
        [ -f "${mailfile}" ] && rm -rf ${mailfile}
        echo "The list of valid CCF ${VALID_CCF}/${validccflist} is not found" >> $mailfile
        mailnotify "mvloccf: Error: ${VALID_CCF}/${validccflist} not found - Abort!" $mailfile
        rm ${mailfile}
        exit
fi

VALIDCONSTITUENTSDIR="/home/ccflib/ftp-area/valid_constituents"
rm -rf ${VALIDCONSTITUENTSDIR}/*

# This operation can only succeed because the subdir valid has enable the write permission 
# for the group "sas" (g=rwx), provided that CCFs belong to sasbuild(5153):sas.
VALIDCCFDIRINTRANET="/ccf/valid"
rm -rf ${VALIDCCFDIRINTRANET}/*

CONSTITUENTSDIR="/home/ccflib/ftp-area/constituents"
n=0
while read ccf
do
        n=$((n + 1))
        echo "$n cp -a ${CONSTITUENTSDIR}/${ccf} ${VALIDCONSTITUENTSDIR}/"
        cp -a ${CONSTITUENTSDIR}/${ccf} ${VALIDCONSTITUENTSDIR}/
        echo "$n cp -a ${CONSTITUENTSDIR}/${ccf} ${VALIDCCFDIRINTRANET}/"
        cp -a ${CONSTITUENTSDIR}/${ccf} ${VALIDCCFDIRINTRANET}/
done < ${VALID_CCF}/${validccflist}

}


#
#   M a i n    p r o g r a m 
#
# 1. Get the list of all ODFs


xsaobslogsize="0" 

getxsaobslog 

xsaobslogsize=`stat --format=%s ${VALID_CCF}/xsaobslog_${now}.txt` 

if [ "$xsaobslogsize"  = "0" ] ; then
        echo "Error: Failure to download the XSA Obs. Log file - Abort" 
        [ -f "${mailfile}" ] && rm -rf ${mailfile}
        echo "The XSA Obs. Log file has 0 size - Not downloaded?" >> $mailfile
        echo "." >> $mailfile
        mailnotify "mlovccf: Error: Failure to download the XSA Obs. Log file - Abort" "$mailfile"
        rm ${mailfile}
        exit
fi 

#
# 2. Initialises HEADAS and SAS
#

# Defines SASBUILD_LOCAL depending on host. 
# Then uses it to build up HEADAS and setup LD_LIBRARY_PATH accordingly.

case "$host" in
        sasbld01n|sasbld02n)
                export SASBUILD_LOCAL="/sasbuild/local/${host}/GNU_CC_CXX_7.1"
                ;;
        scigrid6|cn-*)
                export SASBUILD_LOCAL="/sasbuild/local/sasbld02n/GNU_CC_CXX_7.1"
                ;;
        *) echo "Error: Unsupported host $host" ; exit 1 ;;
esac

export HEADAS=${SASBUILD_LOCAL}/headas/architecture

headas_output="${VALID_CCF}/headas_output"
source $HEADAS/headas-init.sh > ${headas_output} 2>&1

# The next statement should not be necessary because the SAS initialisation 
# provides under $SAS_DIR/libextra all the necessary libraries from GNU C/C++
# which were required to build Heasoft. But, in order to make the HEADAS
# initialisation independent of the SAS initialisation, we set the 
# LD_LIBRARY_PATH as it has to be to run Headas by itself without SAS been
# ready.

export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${SASBUILD_LOCAL}/gcc/lib64


headas_ok=`cat ${headas_output}`

if [ -n "${headas_ok}" ] ; then
        echo "mlovccf: HEADAS initialisation failed with error" >> ${mailfile}
        cat ${headas_output}                                    >> ${mailfile}
        mailnotify "mlovccf: HEADAS initilisation failed" ${mailfile}
        rm ${headas_output} ${mailfile}
        exit 1
fi

# To be able to mix several jobs on the same ccflib account
[ ! -d "${HOME}/pfiles/${host}" ] && mkdir ${HOME}/pfiles/${host}
export PFILES="${HOME}/pfiles/${host};${HEADAS}/syspfiles"
echo -n "HEADAS version: " 
fversion

#
#        W a r n i n g   o n   S A S   i n i t i a l i s a t i o n  
#
# The SAS initialisation produced by setsas.sh sets SAS_CCFPATH to /ccf/pub.
# Hence, if we set SAS_CCFPATH before running setsas.sh, we will always 
# use /ccf/pub as repository for CCF. This is right as long as /ccf/pub is in 
# strict sync with /home/ccflib/ccf_ftp/constituents. But if this is not true, 
# the resulting valid CCFs might be wrong. Therefore, we set it here explicitly. 
#

confsas_output="${VALID_CCF}/confsas_output"
/sas/bin/confsas > ${confsas_output} 2>&1
confsas_ok=`cat ${confsas_output}`

if [ -n "${confsas_ok}" ] ; then
        echo "mlovccf: SAS initialization failed with error" >> ${mailfile}
        cat ${confsas_output}                                >> ${mailfile}
        mailnotify "mlovccf: SAS initialisation failed" ${mailfile}
        rm ${confsas_output} ${mailfile}
        exit 1
fi

source $HOME/setsas.sh 1> /dev/null

# Re-sets SAS_CCFPATH 

export SAS_CCFPATH="/home/ccflib/ftp-area/constituents"

echo "SAS Version: "
sasversion -V 1
export SAS_VERBOSITY=0


# 3. XMM_CALINDEX file from SAS_CCFPATH

MIF=`ls -1 ${SAS_CCFPATH}/XMM_CALINDEX_*.CCF`

# 4. For each OBDS ID registered in the XSA observations list, gets the start 
#    time of the observation. Then runs cifbuild to get the respective CIF.
#    all_ccfs_${now}.txt is filled recursively on each iteration. 
#    Therefore we start with an empty file. The final list will be this one.

#    Output file :          ${VALID_CCF}/all_ccfs_${now}.txt

touch ${VALID_CCF}/all_ccfs_${now}.txt

n=0

while read line 
do
        obsid=`echo $line | awk -F"|" '{print $2}'` 
        stime=`echo $line | awk -F"|" '{print $9}'`
        stime=`echo $stime | tr " " "T"`
        n=$((n+1))
        echo "($n) Processing $obsid $stime" ; echo

        # Run cifbuild

        cif_file=${VALID_CCF}/${obsid}.cif      

        cifbuild --withmasterindexset='yes'  \
                 --masterindexset=${MIF}     \
                 --withobservationdate='yes' \
                 --observationdate=${stime}  \
                 --analysisdate='now'        \
                 --calindexset=${cif_file} 


        # Gets the list of CCFs included in the CIF

        get_ccf_list "${cif_file}" > ${VALID_CCF}/${obsid}_ccfs.tmp

        while read line 
        do
                [ "$line" = "" ] && continue
                class=`echo $line | awk -F" " '{print $1"_"$2}'`
                issue=`echo $line | awk -F" " '{print $3}'` 
                issue=`printf "%04d" ${issue}`
                echo ${class}_${issue}.CCF >> ${VALID_CCF}/${obsid}_ccfs.txt

        done < ${VALID_CCF}/${obsid}_ccfs.tmp

        rm ${VALID_CCF}/${obsid}_ccfs.tmp

        mv ${VALID_CCF}/all_ccfs_${now}.txt ${VALID_CCF}/all_ccfs_${now}.tmp

        cat ${VALID_CCF}/${obsid}_ccfs.txt ${VALID_CCF}/all_ccfs_${now}.tmp | sort -u  >  ${VALID_CCF}/all_ccfs_${now}.txt

        comm -1 -3 --nocheck-order ${VALID_CCF}/all_ccfs_${now}.tmp ${VALID_CCF}/all_ccfs_${now}.txt > ${VALID_CCF}/diff_iteration_${n}.txt
        
        diffsize=`stat --format=%s ${VALID_CCF}/diff_iteration_${n}.txt` 
        
        if [ "$diffsize" != "0" ] ; then
                echo "CCF added in this iteration: " 
                cat ${VALID_CCF}/diff_iteration_${n}.txt
        fi      
        
        echo 
        echo "Number of valid CCFs found so far: "`cat ${VALID_CCF}/all_ccfs_${now}.txt | wc -l` ; echo

        rm ${VALID_CCF}/diff_iteration_${n}.txt
        rm ${cif_file}
        rm ${VALID_CCF}/${obsid}_ccfs.txt
        rm ${VALID_CCF}/all_ccfs_${now}.tmp

done < ${VALID_CCF}/xsaobslog_${now}.txt

# 5. Make a table of classes and issues with the style "Pipeline Release Notes"
#    To get a classification, we need first to obtain all available classes.
#


# Lists all CCF classes

ccf_classes="${VALID_CCF}/ccf_classes.txt"

while read line
do 
        class=`echo $line | awk -F"_" '{print $1"_"$2}'`
        echo $class >> ${ccf_classes}
done < ${VALID_CCF}/all_ccfs_${now}.txt

cat ${ccf_classes} | sort -u > ${VALID_CCF}/kk.txt
mv ${VALID_CCF}/kk.txt ${ccf_classes}


# Output final file is named all_ccfs_${now}_table.txt

total_number_of_ccfs=0

all_ccfs_table="${VALID_CCF}/all_ccfs_${now}_table.txt"

[ -f "${all_ccfs_table}" ] && rm ${all_ccfs_table}

echo "Table of valid CCFs at $now_table"                        >> ${all_ccfs_table}
echo                                                            >> ${all_ccfs_table}
echo "|================================|=============|=======|" >> ${all_ccfs_table} 
echo "| Calibration File               | Issue range | Count |" >> ${all_ccfs_table}
echo "|================================|=============|=======|" >> ${all_ccfs_table}

while read ccf_class
do
        echo -n "Processing class $ccf_class ..." 
        issues_file="${VALID_CCF}/ccf_issues_for_${ccf_class}.txt"
        [ -f "${issues_file}" ] && rm ${issues_file}
        while read line
        do
                class=`echo $line | awk -F"_" '{print $1"_"$2}'`
                [ "$class" != "$ccf_class" ] && continue
                issue=`echo $line | awk -F"_" '{print $3}' | cut -d. -f1`
                echo $issue >> ${issues_file}
        done < ${VALID_CCF}/all_ccfs_${now}.txt

        cat ${issues_file} | sort -u > kk.txt
        mv kk.txt ${issues_file}
        real_number_of_issues_for_this_class=`wc -l ${issues_file} | awk -F" " '{print $1}'`

        first_issue=`head -1 ${issues_file}`
        last_issue=`tail -1 ${issues_file}`

        li=$((10#$last_issue))
        fi=$((10#$first_issue))

        sequential_number_of_issues_for_this_class=$((li - fi + 1))

        asterisk="   "
        [ "${real_number_of_issues_for_this_class}"  -lt "${sequential_number_of_issues_for_this_class}" ] &&  asterisk="(*)"

        total_number_of_ccfs=$((real_number_of_issues_for_this_class + total_number_of_ccfs))

        rn=$real_number_of_issues_for_this_class

        if [ "${first_issue}" != "${last_issue}" ] ; then
           if [ "$asterisk" = "(*)" ] ; then
              printf "| %-30s | %4s-%4s(*)|  %4s |\n"  ${ccf_class} ${first_issue} ${last_issue} ${rn}          >> ${all_ccfs_table}
           else
              printf "| %-30s | %4s-%4s   |  %4s |\n"  ${ccf_class} ${first_issue} ${last_issue} ${rn}          >> ${all_ccfs_table}
           fi
        else
           printf "| %-30s | %4s        |  %4s |\n" ${ccf_class} ${first_issue} ${rn}                           >> ${all_ccfs_table}
        fi

        
        echo "done" 
done < ${ccf_classes}  

echo "|================================|=============|=======|"                                                 >> ${all_ccfs_table}
echo                                                                                                            >> ${all_ccfs_table}
echo "(*): Incomplete range."                                                                                   >> ${all_ccfs_table} 
echo ""                                                                                                         >> ${all_ccfs_table}
echo "Total number of valid CCFs required : ${total_number_of_ccfs}"                                            >> ${all_ccfs_table}
rm ${VALID_CCF}/ccf_classes.txt
rm ${VALID_CCF}/ccf_issues_for*.txt


# 6. Fill in the Valid CCF Set dir with the proper CCFs

fillvalidccfdir "all_ccfs_${now}.txt"

[ -f "${mailfile}" ] && rm -rf ${mailfile}
echo "Valid CCF Set successfully copied to ${VALIDCONSTITUENTSDIR}" >> $mailfile
echo "Valid CCF Set successfully copied to ${VALIDCCFDIRINTRANET}"  >> $mailfile 
mailnotify "mvloccf: Valid CCF Set created successfully" $mailfile
rm ${mailfile}
1	ccflib	1.1	#! /bin/bash
2
3			# mlovccf (make list of valid ccfs)
4			#
5	ccflib	1.7	# Makes the list of valid CCFs. These are all CCFs, among those published since the
6	ccflib	1.2	# beginning of the project, that are required to process any ODF at a given date,
7	ccflib	1.7	# typically the current date. This list will change with time as far as new
8	ccflib	1.2	# CCFs are issued to deal with new calibration data and/or replace obsolete ones.
9	ccflib	1.1	#
10	ccflib	1.10	# To identify the set of CCFs required to process a given ODF is the job of task cifbuild.
11	ccflib	1.2	# To make such identification, cifbuild needs only the start time of the observation.
12	ccflib	1.7	# Therefore, if we provide a list of all observed ODFs at a given date together with their
13			# respective start time, we could compute all the CCFs required to process them.
14			# For such a moment, that list is the list of valid CCFs required to process
15			# any observed ODF.
16	ccflib	1.1	#
17	ccflib	1.7	# We need as input the list of all observed ODFs at a given date.
18			# This is obtained from the report of all observations that the XSA makes to CDS,
19	ccflib	1.10	# xsaobslog.txt (http://nxsa.esac.esa.int/ftp_public/cfs_obslog/xsaobslog.txt).
20	ccflib	1.2	#
21	ccflib	1.20	# $Id: mlovccf,v 1.19 2017/01/10 16:43:39 ccflib Exp $
22	ccflib	1.4
23			# Next two lines allow to submit this script to the grid
24			# request Bourne shell as shell for job
25	ccflib	1.6	#$ -S /bin/bash
26	ccflib	1.1
27	ccflib	1.16	adminmail="eduardo.ojero@sciops.esa.int"
28	ccflib	1.5
29	ccflib	1.17	VALID_CCF="$HOME/processing_valid_ccf"
30	ccflib	1.10
31	ccflib	1.13	mailfile="${VALID_CCF}/mailfile"
32
33	ccflib	1.1	host=`hostname \| cut -d. -f1`
34
35	ccflib	1.5	now=`date +'%Y%m%d_%H%M'`
36	ccflib	1.7	now_table=`date +'%Y-%m-%dT%H:%M:%S'`
37	ccflib	1.3
38	ccflib	1.10
39	ccflib	1.13	# +++ Function mailnotify
40			#
41			# This function is used to notify adminmail on any issue while runnning this procedure
42			#
43			# Needs a subject as $1 and body as local file to be send.
44
45			mailnotify ()
46			{
47
48			[ "$#" -ne "2" ] && return
49
50			subject=$1
51
52			bodyfile=$2
53
54			[ ! -f "${bodyfile}" ] && return
55
56	ccflib	1.15	echo ; echo "Sending message to ${adminmail} with subject ${subject}" ; echo
57
58	ccflib	1.16	mailx -v -s "${subject}" "${adminmail}" < ${bodyfile}
59	ccflib	1.13
60			}
61
62
63
64			# +++ Function getxsaobslog
65			#
66	ccflib	1.10	# We need to get the list of all observed ODFs at the current date.
67			# This is obtained from http://nxsa.esac.esa.int/ftp_public/cds_obslog/xsaobslog.txt.
68
69			getxsaobslog ()
70			{
71
72			XSAOBSURL="http://nxsa.esac.esa.int/ftp_public/cds_obslog/xsaobslog.txt"
73
74			# Remove any xsaobslog.txt previously downloaded.
75
76			[ -f "${VALID_CCF}/xsaobslog.txt" ] && rm -rf ${VALID_CCF}/xsaobslog.txt
77
78			# Get the list latest list of ODFs available from nXSA server.
79
80	ccflib	1.20	wget --quiet ${XSAOBSURL} -O ${VALID_CCF}/xsaobslog.txt
81	ccflib	1.10
82			# Rename xsaobslog.txt to xsaobslog_${now}.txt just to have a reference
83			# of which list of ODFs was used to compute the list of valid CCFs.
84
85			mv ${VALID_CCF}/xsaobslog.txt ${VALID_CCF}/xsaobslog_${now}.txt
86
87			}
88
89
90	ccflib	1.13
91			# +++Function get_ccf_list to list on stdout the table of CCFs in a given CIF.
92			#
93	ccflib	1.2	# Requires that Heasoft is initialised. Otherwise exits with error.
94	ccflib	1.1
95			get_ccf_list()
96			{
97			[ -z "$1" ] && return
98
99			cif_to_process="$1"
100
101			noversion=`which fversion \| grep -c no`
102
103			if [ "${noversion}" != "0" ] ; then
104			echo "Error: Heasoft not initialised !"
105	ccflib	1.13	[ -f "${mailfile}" ] && rm -rf ${mailfile}
106			echo "Running of fversion produced the following output:" >> $mailfile
107			echo "$noversion" >> $mailfile
108			mailnotify "mvloccf: Error: Heasoft not initialised!" $mailfile
109			rm ${mailfile}
110	ccflib	1.1	exit
111			fi
112
113			fdump ${cif_to_process} prhead=no showcol=no showrow=no page=no \
114			columns="SCOPE TYPEID ISSUE" \
115			rows=- STDOUT
116			}
117
118	ccflib	1.13
119
120
121			# +++ Fill in the valid_constituents directory with the Valid CCF set
122			#
123			# The directory to be filled in is ${VALIDCONSTITUENTSDISR}.
124			# This directory is synchronized with the similar directory in the
125			# external ftp server.
126			#
127			# In addition to that, we also use this function to fill in the
128			# /ccf/valid directory available for users in the intranet.
129	ccflib	1.11
130			fillvalidccfdir()
131			{
132
133			[ -z "$1" ] && return
134
135			validccflist=$1
136
137			if [ ! -f "${VALID_CCF}/${validccflist}" ] ; then
138	ccflib	1.12	echo "Error: ${VALID_CCF}/${validccflist} not found - Abort!"
139	ccflib	1.13	[ -f "${mailfile}" ] && rm -rf ${mailfile}
140			echo "The list of valid CCF ${VALID_CCF}/${validccflist} is not found" >> $mailfile
141			mailnotify "mvloccf: Error: ${VALID_CCF}/${validccflist} not found - Abort!" $mailfile
142			rm ${mailfile}
143	ccflib	1.11	exit
144			fi
145
146	ccflib	1.13	VALIDCONSTITUENTSDIR="/home/ccflib/ftp-area/valid_constituents"
147	ccflib	1.11	rm -rf ${VALIDCONSTITUENTSDIR}/*
148
149	ccflib	1.19	# This operation can only succeed because the subdir valid has enable the write permission
150			# for the group "sas" (g=rwx), provided that CCFs belong to sasbuild(5153):sas.
151	ccflib	1.13	VALIDCCFDIRINTRANET="/ccf/valid"
152			rm -rf ${VALIDCCFDIRINTRANET}/*
153
154	ccflib	1.11	CONSTITUENTSDIR="/home/ccflib/ftp-area/constituents"
155	ccflib	1.12	n=0
156	ccflib	1.11	while read ccf
157			do
158	ccflib	1.12	n=$((n + 1))
159			echo "$n cp -a ${CONSTITUENTSDIR}/${ccf} ${VALIDCONSTITUENTSDIR}/"
160	ccflib	1.11	cp -a ${CONSTITUENTSDIR}/${ccf} ${VALIDCONSTITUENTSDIR}/
161	ccflib	1.13	echo "$n cp -a ${CONSTITUENTSDIR}/${ccf} ${VALIDCCFDIRINTRANET}/"
162			cp -a ${CONSTITUENTSDIR}/${ccf} ${VALIDCCFDIRINTRANET}/
163	ccflib	1.12	done < ${VALID_CCF}/${validccflist}
164	ccflib	1.11
165			}
166
167
168	ccflib	1.13	#
169			# M a i n p r o g r a m
170			#
171			# 1. Get the list of all ODFs
172
173	ccflib	1.1
174	ccflib	1.10	xsaobslogsize="0"
175	ccflib	1.1
176	ccflib	1.10	getxsaobslog
177	ccflib	1.1
178	ccflib	1.10	xsaobslogsize=`stat --format=%s ${VALID_CCF}/xsaobslog_${now}.txt`
179	ccflib	1.1
180	ccflib	1.10	if [ "$xsaobslogsize" = "0" ] ; then
181	ccflib	1.13	echo "Error: Failure to download the XSA Obs. Log file - Abort"
182			[ -f "${mailfile}" ] && rm -rf ${mailfile}
183			echo "The XSA Obs. Log file has 0 size - Not downloaded?" >> $mailfile
184			echo "." >> $mailfile
185			mailnotify "mlovccf: Error: Failure to download the XSA Obs. Log file - Abort" "$mailfile"
186			rm ${mailfile}
187	ccflib	1.10	exit
188			fi
189	ccflib	1.1
190	ccflib	1.17	#
191	ccflib	1.18	# 2. Initialises HEADAS and SAS
192			#
193
194	ccflib	1.20	# Defines SASBUILD_LOCAL depending on host.
195			# Then uses it to build up HEADAS and setup LD_LIBRARY_PATH accordingly.
196	ccflib	1.1
197			case "$host" in
198	ccflib	1.20	sasbld01n\|sasbld02n)
199			export SASBUILD_LOCAL="/sasbuild/local/${host}/GNU_CC_CXX_7.1"
200	ccflib	1.1	;;
201	ccflib	1.5	scigrid6\|cn-*)
202	ccflib	1.20	export SASBUILD_LOCAL="/sasbuild/local/sasbld02n/GNU_CC_CXX_7.1"
203	ccflib	1.5	;;
204	ccflib	1.17	*) echo "Error: Unsupported host $host" ; exit 1 ;;
205	ccflib	1.1	esac
206
207	ccflib	1.20	export HEADAS=${SASBUILD_LOCAL}/headas/architecture
208	ccflib	1.1
209	ccflib	1.18	headas_output="${VALID_CCF}/headas_output"
210			source $HEADAS/headas-init.sh > ${headas_output} 2>&1
211	ccflib	1.20
212			# The next statement should not be necessary because the SAS initialisation
213			# provides under $SAS_DIR/libextra all the necessary libraries from GNU C/C++
214			# which were required to build Heasoft. But, in order to make the HEADAS
215			# initialisation independent of the SAS initialisation, we set the
216			# LD_LIBRARY_PATH as it has to be to run Headas by itself without SAS been
217			# ready.
218
219			export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${SASBUILD_LOCAL}/gcc/lib64
220
221
222	ccflib	1.18	headas_ok=`cat ${headas_output}`
223
224			if [ -n "${headas_ok}" ] ; then
225			echo "mlovccf: HEADAS initialisation failed with error" >> ${mailfile}
226			cat ${headas_output} >> ${mailfile}
227	ccflib	1.17	mailnotify "mlovccf: HEADAS initilisation failed" ${mailfile}
228	ccflib	1.18	rm ${headas_output} ${mailfile}
229	ccflib	1.17	exit 1
230			fi
231	ccflib	1.1
232	ccflib	1.17	# To be able to mix several jobs on the same ccflib account
233			[ ! -d "${HOME}/pfiles/${host}" ] && mkdir ${HOME}/pfiles/${host}
234			export PFILES="${HOME}/pfiles/${host};${HEADAS}/syspfiles"
235			echo -n "HEADAS version: "
236			fversion
237
238	ccflib	1.18	#
239			# W a r n i n g o n S A S i n i t i a l i s a t i o n
240			#
241			# The SAS initialisation produced by setsas.sh sets SAS_CCFPATH to /ccf/pub.
242			# Hence, if we set SAS_CCFPATH before running setsas.sh, we will always
243			# use /ccf/pub as repository for CCF. This is right as long as /ccf/pub is in
244			# strict sync with /home/ccflib/ccf_ftp/constituents. But if this is not true,
245			# the resulting valid CCFs might be wrong. Therefore, we set it here explicitly.
246			#
247
248			confsas_output="${VALID_CCF}/confsas_output"
249			/sas/bin/confsas > ${confsas_output} 2>&1
250			confsas_ok=`cat ${confsas_output}`
251
252			if [ -n "${confsas_ok}" ] ; then
253			echo "mlovccf: SAS initialization failed with error" >> ${mailfile}
254			cat ${confsas_output} >> ${mailfile}
255			mailnotify "mlovccf: SAS initialisation failed" ${mailfile}
256			rm ${confsas_output} ${mailfile}
257			exit 1
258	ccflib	1.17	fi
259
260			source $HOME/setsas.sh 1> /dev/null
261	ccflib	1.18
262			# Re-sets SAS_CCFPATH
263
264	ccflib	1.17	export SAS_CCFPATH="/home/ccflib/ftp-area/constituents"
265	ccflib	1.18
266	ccflib	1.17	echo "SAS Version: "
267			sasversion -V 1
268			export SAS_VERBOSITY=0
269
270	ccflib	1.18
271	ccflib	1.17	# 3. XMM_CALINDEX file from SAS_CCFPATH
272
273			MIF=`ls -1 ${SAS_CCFPATH}/XMM_CALINDEX_*.CCF`
274
275			# 4. For each OBDS ID registered in the XSA observations list, gets the start
276			# time of the observation. Then runs cifbuild to get the respective CIF.
277			# all_ccfs_${now}.txt is filled recursively on each iteration.
278			# Therefore we start with an empty file. The final list will be this one.
279	ccflib	1.13
280			# Output file : ${VALID_CCF}/all_ccfs_${now}.txt
281	ccflib	1.1
282	ccflib	1.3	touch ${VALID_CCF}/all_ccfs_${now}.txt
283	ccflib	1.2
284	ccflib	1.1	n=0
285	ccflib	1.2
286	ccflib	1.1	while read line
287			do
288			obsid=`echo $line \| awk -F"\|" '{print $2}'`
289			stime=`echo $line \| awk -F"\|" '{print $9}'`
290			stime=`echo $stime \| tr " " "T"`
291			n=$((n+1))
292			echo "($n) Processing $obsid $stime" ; echo
293
294			# Run cifbuild
295
296			cif_file=${VALID_CCF}/${obsid}.cif
297
298			cifbuild --withmasterindexset='yes' \
299			--masterindexset=${MIF} \
300			--withobservationdate='yes' \
301			--observationdate=${stime} \
302			--analysisdate='now' \
303			--calindexset=${cif_file}
304
305
306			# Gets the list of CCFs included in the CIF
307
308			get_ccf_list "${cif_file}" > ${VALID_CCF}/${obsid}_ccfs.tmp
309
310			while read line
311			do
312			[ "$line" = "" ] && continue
313			class=`echo $line \| awk -F" " '{print $1"_"$2}'`
314			issue=`echo $line \| awk -F" " '{print $3}'`
315			issue=`printf "%04d" ${issue}`
316			echo ${class}_${issue}.CCF >> ${VALID_CCF}/${obsid}_ccfs.txt
317	ccflib	1.2
318	ccflib	1.1	done < ${VALID_CCF}/${obsid}_ccfs.tmp
319
320			rm ${VALID_CCF}/${obsid}_ccfs.tmp
321
322	ccflib	1.3	mv ${VALID_CCF}/all_ccfs_${now}.txt ${VALID_CCF}/all_ccfs_${now}.tmp
323	ccflib	1.2
324	ccflib	1.3	cat ${VALID_CCF}/${obsid}_ccfs.txt ${VALID_CCF}/all_ccfs_${now}.tmp \| sort -u > ${VALID_CCF}/all_ccfs_${now}.txt
325	ccflib	1.1
326	ccflib	1.17	comm -1 -3 --nocheck-order ${VALID_CCF}/all_ccfs_${now}.tmp ${VALID_CCF}/all_ccfs_${now}.txt > ${VALID_CCF}/diff_iteration_${n}.txt
327
328			diffsize=`stat --format=%s ${VALID_CCF}/diff_iteration_${n}.txt`
329
330			if [ "$diffsize" != "0" ] ; then
331			echo "CCF added in this iteration: "
332			cat ${VALID_CCF}/diff_iteration_${n}.txt
333			fi
334
335			echo
336			echo "Number of valid CCFs found so far: "`cat ${VALID_CCF}/all_ccfs_${now}.txt \| wc -l` ; echo
337
338			rm ${VALID_CCF}/diff_iteration_${n}.txt
339	ccflib	1.1	rm ${cif_file}
340			rm ${VALID_CCF}/${obsid}_ccfs.txt
341	ccflib	1.3	rm ${VALID_CCF}/all_ccfs_${now}.tmp
342	ccflib	1.1
343	ccflib	1.7	done < ${VALID_CCF}/xsaobslog_${now}.txt
344	ccflib	1.2
345	ccflib	1.13	# 5. Make a table of classes and issues with the style "Pipeline Release Notes"
346			# To get a classification, we need first to obtain all available classes.
347			#
348
349	ccflib	1.2
350			# Lists all CCF classes
351
352			ccf_classes="${VALID_CCF}/ccf_classes.txt"
353
354			while read line
355			do
356			class=`echo $line \| awk -F"_" '{print $1"_"$2}'`
357			echo $class >> ${ccf_classes}
358	ccflib	1.3	done < ${VALID_CCF}/all_ccfs_${now}.txt
359	ccflib	1.2
360			cat ${ccf_classes} \| sort -u > ${VALID_CCF}/kk.txt
361			mv ${VALID_CCF}/kk.txt ${ccf_classes}
362
363	ccflib	1.13
364
365	ccflib	1.3	# Output final file is named all_ccfs_${now}_table.txt
366
367			total_number_of_ccfs=0
368	ccflib	1.2
369	ccflib	1.7	all_ccfs_table="${VALID_CCF}/all_ccfs_${now}_table.txt"
370	ccflib	1.2
371			[ -f "${all_ccfs_table}" ] && rm ${all_ccfs_table}
372
373	ccflib	1.7	echo "Table of valid CCFs at $now_table" >> ${all_ccfs_table}
374			echo >> ${all_ccfs_table}
375			echo "\|================================\|=============\|=======\|" >> ${all_ccfs_table}
376			echo "\| Calibration File \| Issue range \| Count \|" >> ${all_ccfs_table}
377			echo "\|================================\|=============\|=======\|" >> ${all_ccfs_table}
378	ccflib	1.2
379			while read ccf_class
380	ccflib	1.3	do
381			echo -n "Processing class $ccf_class ..."
382	ccflib	1.2	issues_file="${VALID_CCF}/ccf_issues_for_${ccf_class}.txt"
383			[ -f "${issues_file}" ] && rm ${issues_file}
384			while read line
385			do
386			class=`echo $line \| awk -F"_" '{print $1"_"$2}'`
387			[ "$class" != "$ccf_class" ] && continue
388			issue=`echo $line \| awk -F"_" '{print $3}' \| cut -d. -f1`
389			echo $issue >> ${issues_file}
390	ccflib	1.3	done < ${VALID_CCF}/all_ccfs_${now}.txt
391	ccflib	1.2
392			cat ${issues_file} \| sort -u > kk.txt
393			mv kk.txt ${issues_file}
394	ccflib	1.3	real_number_of_issues_for_this_class=`wc -l ${issues_file} \| awk -F" " '{print $1}'`
395	ccflib	1.2
396			first_issue=`head -1 ${issues_file}`
397			last_issue=`tail -1 ${issues_file}`
398
399	ccflib	1.3	li=$((10#$last_issue))
400			fi=$((10#$first_issue))
401
402	ccflib	1.7	sequential_number_of_issues_for_this_class=$((li - fi + 1))
403	ccflib	1.8
404			asterisk=" "
405			[ "${real_number_of_issues_for_this_class}" -lt "${sequential_number_of_issues_for_this_class}" ] && asterisk="(*)"
406
407	ccflib	1.7	total_number_of_ccfs=$((real_number_of_issues_for_this_class + total_number_of_ccfs))
408
409			rn=$real_number_of_issues_for_this_class
410	ccflib	1.3
411	ccflib	1.8	if [ "${first_issue}" != "${last_issue}" ] ; then
412			if [ "$asterisk" = "(*)" ] ; then
413			printf "\| %-30s \| %4s-%4s(*)\| %4s \|\n" ${ccf_class} ${first_issue} ${last_issue} ${rn} >> ${all_ccfs_table}
414			else
415			printf "\| %-30s \| %4s-%4s \| %4s \|\n" ${ccf_class} ${first_issue} ${last_issue} ${rn} >> ${all_ccfs_table}
416			fi
417			else
418			printf "\| %-30s \| %4s \| %4s \|\n" ${ccf_class} ${first_issue} ${rn} >> ${all_ccfs_table}
419			fi
420
421	ccflib	1.7
422			echo "done"
423	ccflib	1.2	done < ${ccf_classes}
424
425	ccflib	1.7	echo "\|================================\|=============\|=======\|" >> ${all_ccfs_table}
426			echo >> ${all_ccfs_table}
427			echo "(*): Incomplete range." >> ${all_ccfs_table}
428			echo "" >> ${all_ccfs_table}
429			echo "Total number of valid CCFs required : ${total_number_of_ccfs}" >> ${all_ccfs_table}
430	ccflib	1.3	rm ${VALID_CCF}/ccf_classes.txt
431			rm ${VALID_CCF}/ccf_issues_for*.txt
432	ccflib	1.11
433	ccflib	1.13
434
435			# 6. Fill in the Valid CCF Set dir with the proper CCFs
436	ccflib	1.11
437	ccflib	1.12	fillvalidccfdir "all_ccfs_${now}.txt"
438	ccflib	1.13
439			[ -f "${mailfile}" ] && rm -rf ${mailfile}
440			echo "Valid CCF Set successfully copied to ${VALIDCONSTITUENTSDIR}" >> $mailfile
441			echo "Valid CCF Set successfully copied to ${VALIDCCFDIRINTRANET}" >> $mailfile
442			mailnotify "mvloccf: Valid CCF Set created successfully" $mailfile
443			rm ${mailfile}