Annotation of /bin/mlovccf

#! /bin/bash

# mlovccf (make list of valid ccfs)
#
# Makes the list of valid CCFs. These are all CCFs, among those published since the 
# beginning of the project, that are required to process any ODF at a given date,
# typically the current date. This list will change with time as far as new
# CCFs are issued to deal with new calibration data and/or replace obsolete ones. 
#
# To identify the set of CCFs required to process a given ODF is the job of task cifbuild. 
# To make such identification, cifbuild needs only the start time of the observation. 
# Therefore, if we provide a list of all observed ODFs at a given date together with their
# respective start time, we could compute all the CCFs required to process them.
# For such a moment, that list is the list of valid CCFs required to process 
# any observed ODF. 
#
# We need as input the list of all observed ODFs at a given date.
# This is obtained from the report of all observations that the XSA makes to CDS,
# xsaobslog.txt (http://nxsa.esac.esa.int/ftp_public/cfs_obslog/xsaobslog.txt). 
#
# $Id: mlovccf,v 1.13 2016/04/01 12:22:28 ccflib Exp $

# Next two lines allow to submit this script to the grid
# request Bourne shell as shell for job
#$ -S /bin/bash

adminmail="eduardo.ojero@esa.int"

VALID_CCF="$HOME/valid_ccf"

mailfile="${VALID_CCF}/mailfile"

host=`hostname | cut -d. -f1`

now=`date +'%Y%m%d_%H%M'`
now_table=`date +'%Y-%m-%dT%H:%M:%S'`


# +++ Function mailnotify
#
# This function is used to notify adminmail on any issue while runnning this procedure
#
# Needs a subject as $1 and body as local file to be send.

mailnotify ()
{

[ "$#" -ne "2" ] && return

subject=$1 

bodyfile=$2

[ ! -f "${bodyfile}" ] && return 

mailx -s "${subject}" "${adminmail}" < ${bodyfile}

}


# +++ Function getxsaobslog
#
# We need to get the list of all observed ODFs at the current date. 
# This is obtained from http://nxsa.esac.esa.int/ftp_public/cds_obslog/xsaobslog.txt.

getxsaobslog ()
{

XSAOBSURL="http://nxsa.esac.esa.int/ftp_public/cds_obslog/xsaobslog.txt"

# Remove any xsaobslog.txt previously downloaded. 

[ -f "${VALID_CCF}/xsaobslog.txt" ] && rm -rf ${VALID_CCF}/xsaobslog.txt

# Get the list latest list of ODFs available from nXSA server.
 
wget -q ${XSAOBSURL} -O ${VALID_CCF}/xsaobslog.txt 

# Rename xsaobslog.txt to xsaobslog_${now}.txt just to have a reference 
# of which list of ODFs was used to compute the list of valid CCFs.

mv ${VALID_CCF}/xsaobslog.txt ${VALID_CCF}/xsaobslog_${now}.txt

}


# +++ Function find_latest_mif to get the latest XMM_CALINDEX from given directory

find_latest_mif()
{

[ -z "$1" ] && return

CCFPATH="$1"

maxissue="0"
for mif in `ls -1 ${CCFPATH}/XMM_CALINDEX_*.CCF`
do 
        mifbase=`basename $mif`
        issue=`echo $mifbase | awk -F"." '{print $1}' | awk -F"_" '{print $3}'`
        [ "$issue" -ge "$maxissue" ] && maxissue="$issue"
done

MIF=${CCFPATH}/XMM_CALINDEX_${maxissue}.CCF

}


# +++Function get_ccf_list to list on stdout the table of CCFs in a given CIF.
#
# Requires that Heasoft is initialised. Otherwise exits with error.

get_ccf_list()
{
[ -z "$1" ] && return

cif_to_process="$1"

noversion=`which fversion | grep -c no`

if [ "${noversion}" != "0" ] ; then 
        echo "Error: Heasoft not initialised !"
        [ -f "${mailfile}" ] && rm -rf ${mailfile}
        echo "Running of fversion produced the following output:" >> $mailfile
        echo "$noversion" >> $mailfile
        mailnotify "mvloccf: Error: Heasoft not initialised!" $mailfile
        rm ${mailfile}
        exit
fi

fdump ${cif_to_process} prhead=no showcol=no showrow=no page=no \
                        columns="SCOPE TYPEID ISSUE"            \
                        rows=-  STDOUT  
}


# +++ Fill in the valid_constituents directory with the Valid CCF set
#
# The directory to be filled in is ${VALIDCONSTITUENTSDISR}. 
# This directory is synchronized with the similar directory in the 
# external ftp server.
#
# In addition to that, we also use this function to fill in the 
# /ccf/valid directory available for users in the intranet.

fillvalidccfdir()
{

[ -z "$1" ] && return

validccflist=$1

if [ ! -f "${VALID_CCF}/${validccflist}"  ] ; then
        echo "Error: ${VALID_CCF}/${validccflist} not found - Abort!" 
        [ -f "${mailfile}" ] && rm -rf ${mailfile}
        echo "The list of valid CCF ${VALID_CCF}/${validccflist} is not found" >> $mailfile
        mailnotify "mvloccf: Error: ${VALID_CCF}/${validccflist} not found - Abort!" $mailfile
        rm ${mailfile}
        exit
fi

VALIDCONSTITUENTSDIR="/home/ccflib/ftp-area/valid_constituents"
rm -rf ${VALIDCONSTITUENTSDIR}/*

VALIDCCFDIRINTRANET="/ccf/valid"
rm -rf ${VALIDCCFDIRINTRANET}/*

CONSTITUENTSDIR="/home/ccflib/ftp-area/constituents"
n=0
while read ccf
do
        n=$((n + 1))
        echo "$n cp -a ${CONSTITUENTSDIR}/${ccf} ${VALIDCONSTITUENTSDIR}/"
        cp -a ${CONSTITUENTSDIR}/${ccf} ${VALIDCONSTITUENTSDIR}/
        echo "$n cp -a ${CONSTITUENTSDIR}/${ccf} ${VALIDCCFDIRINTRANET}/"
        cp -a ${CONSTITUENTSDIR}/${ccf} ${VALIDCCFDIRINTRANET}/
done < ${VALID_CCF}/${validccflist}

}


#
#   M a i n    p r o g r a m 
#
# 1. Get the list of all ODFs


xsaobslogsize="0" 

getxsaobslog 

xsaobslogsize=`stat --format=%s ${VALID_CCF}/xsaobslog_${now}.txt` 

if [ "$xsaobslogsize"  = "0" ] ; then
        echo "Error: Failure to download the XSA Obs. Log file - Abort" 
        [ -f "${mailfile}" ] && rm -rf ${mailfile}
        echo "The XSA Obs. Log file has 0 size - Not downloaded?" >> $mailfile
        echo "." >> $mailfile
        mailnotify "mlovccf: Error: Failure to download the XSA Obs. Log file - Abort" "$mailfile"
        rm ${mailfile}
        exit
fi 

# 2. Sets SAS_CCFPATH and initialises HEADAS and SAS depending on host 

case "$host" in
        xvsoc01|xmm)
                export SAS_CCFPATH="/data/xmm/ccflib/ftp-area/constituents"
                export SAS_DIR=/data/xmm/ccflib/sas
                export SAS_PATH=$SAS_DIR
                source $SAS_DIR/sas-setup.sh
                ;;
        sasbld01|sasbld02)
                export SAS_CCFPATH="/home/ccflib/ftp-area/constituents"
                /sas/bin/confsas
                export HEADAS=/sasbuild/local/${host}/headas/architecture
                . $HEADAS/headas-init.sh
                # To be able to mix several jobs on the same ccflib account
                [ ! -d "${HOME}/pfiles/${host}" ] && mkdir ${HOME}/pfiles/${host}
                export PFILES="${HOME}/pfiles/${host};${HEADAS}/syspfiles"
                echo -n "HEADAS version: " 
                fversion
                source $HOME/setsas.sh 1> /dev/null
                echo "SAS Version: "
                sasversion -V 1
                export SAS_VERBOSITY=0
                ;;
        scigrid6|cn-*)
                export SAS_CCFPATH="/home/ccflib/ftp-area/constituents"
                /sas/bin/confsas
                export HEADAS=/sasbuild/local/sasbld02/headas/architecture
                . $HEADAS/headas-init.sh
                # To be able to mix several jobs on the same ccflib account
                [ ! -d "${HOME}/pfiles/${host}" ] && mkdir ${HOME}/pfiles/${host}
                export PFILES="${HOME}/pfiles/${host};${HEADAS}/syspfiles"
                echo -n "HEADAS version: " 
                fversion
                source $HOME/setsas.sh 1> /dev/null
                echo "SAS Version: "
                sasversion -V 1
                export SAS_VERBOSITY=0
                ;;
        *) echo "Error: Do not know how to do it in host $host" ; exit ;;
esac

# 3. Finds the latest MIF issue

find_latest_mif "${SAS_CCFPATH}"


# 4. Scans the list of OBDS ID registered in the previous list to get the start time
#    Then runs cifbuild to get the respective CIF.
#    all_ccfs_${now}.txt is filled recursively on each iteration. Therefore we start
#    with an empty file.

#    Output file :          ${VALID_CCF}/all_ccfs_${now}.txt

touch ${VALID_CCF}/all_ccfs_${now}.txt

n=0

while read line 
do
        obsid=`echo $line | awk -F"|" '{print $2}'` 
        stime=`echo $line | awk -F"|" '{print $9}'`
        stime=`echo $stime | tr " " "T"`
        n=$((n+1))
        echo "($n) Processing $obsid $stime" ; echo

        # Run cifbuild

        cif_file=${VALID_CCF}/${obsid}.cif      

        cifbuild --withmasterindexset='yes'  \
                 --masterindexset=${MIF}     \
                 --withobservationdate='yes' \
                 --observationdate=${stime}  \
                 --analysisdate='now'        \
                 --calindexset=${cif_file} 


        # Gets the list of CCFs included in the CIF

        get_ccf_list "${cif_file}" > ${VALID_CCF}/${obsid}_ccfs.tmp

        while read line 
        do
                [ "$line" = "" ] && continue
                class=`echo $line | awk -F" " '{print $1"_"$2}'`
                issue=`echo $line | awk -F" " '{print $3}'` 
                issue=`printf "%04d" ${issue}`
                echo ${class}_${issue}.CCF >> ${VALID_CCF}/${obsid}_ccfs.txt

        done < ${VALID_CCF}/${obsid}_ccfs.tmp

        rm ${VALID_CCF}/${obsid}_ccfs.tmp

        mv ${VALID_CCF}/all_ccfs_${now}.txt ${VALID_CCF}/all_ccfs_${now}.tmp

        cat ${VALID_CCF}/${obsid}_ccfs.txt ${VALID_CCF}/all_ccfs_${now}.tmp | sort -u  >  ${VALID_CCF}/all_ccfs_${now}.txt

        rm ${cif_file}
        rm ${VALID_CCF}/${obsid}_ccfs.txt
        rm ${VALID_CCF}/all_ccfs_${now}.tmp

done < ${VALID_CCF}/xsaobslog_${now}.txt

# 5. Make a table of classes and issues with the style "Pipeline Release Notes"
#    To get a classification, we need first to obtain all available classes.
#


# Lists all CCF classes

ccf_classes="${VALID_CCF}/ccf_classes.txt"

while read line
do 
        class=`echo $line | awk -F"_" '{print $1"_"$2}'`
        echo $class >> ${ccf_classes}
done < ${VALID_CCF}/all_ccfs_${now}.txt

cat ${ccf_classes} | sort -u > ${VALID_CCF}/kk.txt
mv ${VALID_CCF}/kk.txt ${ccf_classes}


# Output final file is named all_ccfs_${now}_table.txt

total_number_of_ccfs=0

all_ccfs_table="${VALID_CCF}/all_ccfs_${now}_table.txt"

[ -f "${all_ccfs_table}" ] && rm ${all_ccfs_table}

echo "Table of valid CCFs at $now_table"                        >> ${all_ccfs_table}
echo                                                            >> ${all_ccfs_table}
echo "|================================|=============|=======|" >> ${all_ccfs_table} 
echo "| Calibration File               | Issue range | Count |" >> ${all_ccfs_table}
echo "|================================|=============|=======|" >> ${all_ccfs_table}

while read ccf_class
do
        echo -n "Processing class $ccf_class ..." 
        issues_file="${VALID_CCF}/ccf_issues_for_${ccf_class}.txt"
        [ -f "${issues_file}" ] && rm ${issues_file}
        while read line
        do
                class=`echo $line | awk -F"_" '{print $1"_"$2}'`
                [ "$class" != "$ccf_class" ] && continue
                issue=`echo $line | awk -F"_" '{print $3}' | cut -d. -f1`
                echo $issue >> ${issues_file}
        done < ${VALID_CCF}/all_ccfs_${now}.txt

        cat ${issues_file} | sort -u > kk.txt
        mv kk.txt ${issues_file}
        real_number_of_issues_for_this_class=`wc -l ${issues_file} | awk -F" " '{print $1}'`

        first_issue=`head -1 ${issues_file}`
        last_issue=`tail -1 ${issues_file}`

        li=$((10#$last_issue))
        fi=$((10#$first_issue))

        sequential_number_of_issues_for_this_class=$((li - fi + 1))

        asterisk="   "
        [ "${real_number_of_issues_for_this_class}"  -lt "${sequential_number_of_issues_for_this_class}" ] &&  asterisk="(*)"

        total_number_of_ccfs=$((real_number_of_issues_for_this_class + total_number_of_ccfs))

        rn=$real_number_of_issues_for_this_class

        if [ "${first_issue}" != "${last_issue}" ] ; then
           if [ "$asterisk" = "(*)" ] ; then
              printf "| %-30s | %4s-%4s(*)|  %4s |\n"  ${ccf_class} ${first_issue} ${last_issue} ${rn}          >> ${all_ccfs_table}
           else
              printf "| %-30s | %4s-%4s   |  %4s |\n"  ${ccf_class} ${first_issue} ${last_issue} ${rn}          >> ${all_ccfs_table}
           fi
        else
           printf "| %-30s | %4s        |  %4s |\n" ${ccf_class} ${first_issue} ${rn}                           >> ${all_ccfs_table}
        fi

        
        echo "done" 
done < ${ccf_classes}  

echo "|================================|=============|=======|"                                                 >> ${all_ccfs_table}
echo                                                                                                            >> ${all_ccfs_table}
echo "(*): Incomplete range."                                                                                   >> ${all_ccfs_table} 
echo ""                                                                                                         >> ${all_ccfs_table}
echo "Total number of valid CCFs required : ${total_number_of_ccfs}"                                            >> ${all_ccfs_table}
rm ${VALID_CCF}/ccf_classes.txt
rm ${VALID_CCF}/ccf_issues_for*.txt


# 6. Fill in the Valid CCF Set dir with the proper CCFs

fillvalidccfdir "all_ccfs_${now}.txt"

[ -f "${mailfile}" ] && rm -rf ${mailfile}
echo "Valid CCF Set successfully copied to ${VALIDCONSTITUENTSDIR}" >> $mailfile
echo "Valid CCF Set successfully copied to ${VALIDCCFDIRINTRANET}"  >> $mailfile 
mailnotify "mvloccf: Valid CCF Set created successfully" $mailfile
rm ${mailfile}
1	ccflib	1.1	#! /bin/bash
2
3			# mlovccf (make list of valid ccfs)
4			#
5	ccflib	1.7	# Makes the list of valid CCFs. These are all CCFs, among those published since the
6	ccflib	1.2	# beginning of the project, that are required to process any ODF at a given date,
7	ccflib	1.7	# typically the current date. This list will change with time as far as new
8	ccflib	1.2	# CCFs are issued to deal with new calibration data and/or replace obsolete ones.
9	ccflib	1.1	#
10	ccflib	1.10	# To identify the set of CCFs required to process a given ODF is the job of task cifbuild.
11	ccflib	1.2	# To make such identification, cifbuild needs only the start time of the observation.
12	ccflib	1.7	# Therefore, if we provide a list of all observed ODFs at a given date together with their
13			# respective start time, we could compute all the CCFs required to process them.
14			# For such a moment, that list is the list of valid CCFs required to process
15			# any observed ODF.
16	ccflib	1.1	#
17	ccflib	1.7	# We need as input the list of all observed ODFs at a given date.
18			# This is obtained from the report of all observations that the XSA makes to CDS,
19	ccflib	1.10	# xsaobslog.txt (http://nxsa.esac.esa.int/ftp_public/cfs_obslog/xsaobslog.txt).
20	ccflib	1.2	#
21	ccflib	1.14	# $Id: mlovccf,v 1.13 2016/04/01 12:22:28 ccflib Exp $
22	ccflib	1.4
23			# Next two lines allow to submit this script to the grid
24			# request Bourne shell as shell for job
25	ccflib	1.6	#$ -S /bin/bash
26	ccflib	1.1
27	ccflib	1.13	adminmail="eduardo.ojero@esa.int"
28	ccflib	1.5
29	ccflib	1.10	VALID_CCF="$HOME/valid_ccf"
30
31	ccflib	1.13	mailfile="${VALID_CCF}/mailfile"
32
33	ccflib	1.1	host=`hostname \| cut -d. -f1`
34
35	ccflib	1.5	now=`date +'%Y%m%d_%H%M'`
36	ccflib	1.7	now_table=`date +'%Y-%m-%dT%H:%M:%S'`
37	ccflib	1.3
38	ccflib	1.10
39	ccflib	1.13	# +++ Function mailnotify
40			#
41			# This function is used to notify adminmail on any issue while runnning this procedure
42			#
43			# Needs a subject as $1 and body as local file to be send.
44
45			mailnotify ()
46			{
47
48			[ "$#" -ne "2" ] && return
49
50			subject=$1
51
52			bodyfile=$2
53
54			[ ! -f "${bodyfile}" ] && return
55
56	ccflib	1.14	mailx -s "${subject}" "${adminmail}" < ${bodyfile}
57	ccflib	1.13
58			}
59
60
61
62			# +++ Function getxsaobslog
63			#
64	ccflib	1.10	# We need to get the list of all observed ODFs at the current date.
65			# This is obtained from http://nxsa.esac.esa.int/ftp_public/cds_obslog/xsaobslog.txt.
66
67			getxsaobslog ()
68			{
69
70			XSAOBSURL="http://nxsa.esac.esa.int/ftp_public/cds_obslog/xsaobslog.txt"
71
72			# Remove any xsaobslog.txt previously downloaded.
73
74			[ -f "${VALID_CCF}/xsaobslog.txt" ] && rm -rf ${VALID_CCF}/xsaobslog.txt
75
76			# Get the list latest list of ODFs available from nXSA server.
77
78	ccflib	1.11	wget -q ${XSAOBSURL} -O ${VALID_CCF}/xsaobslog.txt
79	ccflib	1.10
80			# Rename xsaobslog.txt to xsaobslog_${now}.txt just to have a reference
81			# of which list of ODFs was used to compute the list of valid CCFs.
82
83			mv ${VALID_CCF}/xsaobslog.txt ${VALID_CCF}/xsaobslog_${now}.txt
84
85			}
86
87
88	ccflib	1.13
89			# +++ Function find_latest_mif to get the latest XMM_CALINDEX from given directory
90	ccflib	1.1
91			find_latest_mif()
92			{
93
94			[ -z "$1" ] && return
95
96			CCFPATH="$1"
97
98			maxissue="0"
99			for mif in `ls -1 ${CCFPATH}/XMM_CALINDEX_*.CCF`
100			do
101			mifbase=`basename $mif`
102			issue=`echo $mifbase \| awk -F"." '{print $1}' \| awk -F"_" '{print $3}'`
103			[ "$issue" -ge "$maxissue" ] && maxissue="$issue"
104			done
105
106			MIF=${CCFPATH}/XMM_CALINDEX_${maxissue}.CCF
107
108			}
109
110	ccflib	1.13
111
112			# +++Function get_ccf_list to list on stdout the table of CCFs in a given CIF.
113			#
114	ccflib	1.2	# Requires that Heasoft is initialised. Otherwise exits with error.
115	ccflib	1.1
116			get_ccf_list()
117			{
118			[ -z "$1" ] && return
119
120			cif_to_process="$1"
121
122			noversion=`which fversion \| grep -c no`
123
124			if [ "${noversion}" != "0" ] ; then
125			echo "Error: Heasoft not initialised !"
126	ccflib	1.13	[ -f "${mailfile}" ] && rm -rf ${mailfile}
127			echo "Running of fversion produced the following output:" >> $mailfile
128			echo "$noversion" >> $mailfile
129			mailnotify "mvloccf: Error: Heasoft not initialised!" $mailfile
130			rm ${mailfile}
131	ccflib	1.1	exit
132			fi
133
134			fdump ${cif_to_process} prhead=no showcol=no showrow=no page=no \
135			columns="SCOPE TYPEID ISSUE" \
136			rows=- STDOUT
137			}
138
139	ccflib	1.13
140
141
142			# +++ Fill in the valid_constituents directory with the Valid CCF set
143			#
144			# The directory to be filled in is ${VALIDCONSTITUENTSDISR}.
145			# This directory is synchronized with the similar directory in the
146			# external ftp server.
147			#
148			# In addition to that, we also use this function to fill in the
149			# /ccf/valid directory available for users in the intranet.
150	ccflib	1.11
151			fillvalidccfdir()
152			{
153
154			[ -z "$1" ] && return
155
156			validccflist=$1
157
158			if [ ! -f "${VALID_CCF}/${validccflist}" ] ; then
159	ccflib	1.12	echo "Error: ${VALID_CCF}/${validccflist} not found - Abort!"
160	ccflib	1.13	[ -f "${mailfile}" ] && rm -rf ${mailfile}
161			echo "The list of valid CCF ${VALID_CCF}/${validccflist} is not found" >> $mailfile
162			mailnotify "mvloccf: Error: ${VALID_CCF}/${validccflist} not found - Abort!" $mailfile
163			rm ${mailfile}
164	ccflib	1.11	exit
165			fi
166
167	ccflib	1.13	VALIDCONSTITUENTSDIR="/home/ccflib/ftp-area/valid_constituents"
168	ccflib	1.11	rm -rf ${VALIDCONSTITUENTSDIR}/*
169
170	ccflib	1.13	VALIDCCFDIRINTRANET="/ccf/valid"
171			rm -rf ${VALIDCCFDIRINTRANET}/*
172
173	ccflib	1.11	CONSTITUENTSDIR="/home/ccflib/ftp-area/constituents"
174	ccflib	1.12	n=0
175	ccflib	1.11	while read ccf
176			do
177	ccflib	1.12	n=$((n + 1))
178			echo "$n cp -a ${CONSTITUENTSDIR}/${ccf} ${VALIDCONSTITUENTSDIR}/"
179	ccflib	1.11	cp -a ${CONSTITUENTSDIR}/${ccf} ${VALIDCONSTITUENTSDIR}/
180	ccflib	1.13	echo "$n cp -a ${CONSTITUENTSDIR}/${ccf} ${VALIDCCFDIRINTRANET}/"
181			cp -a ${CONSTITUENTSDIR}/${ccf} ${VALIDCCFDIRINTRANET}/
182	ccflib	1.12	done < ${VALID_CCF}/${validccflist}
183	ccflib	1.11
184			}
185
186
187	ccflib	1.13	#
188			# M a i n p r o g r a m
189			#
190			# 1. Get the list of all ODFs
191
192	ccflib	1.1
193	ccflib	1.10	xsaobslogsize="0"
194	ccflib	1.1
195	ccflib	1.10	getxsaobslog
196	ccflib	1.1
197	ccflib	1.10	xsaobslogsize=`stat --format=%s ${VALID_CCF}/xsaobslog_${now}.txt`
198	ccflib	1.1
199	ccflib	1.10	if [ "$xsaobslogsize" = "0" ] ; then
200	ccflib	1.13	echo "Error: Failure to download the XSA Obs. Log file - Abort"
201			[ -f "${mailfile}" ] && rm -rf ${mailfile}
202			echo "The XSA Obs. Log file has 0 size - Not downloaded?" >> $mailfile
203			echo "." >> $mailfile
204			mailnotify "mlovccf: Error: Failure to download the XSA Obs. Log file - Abort" "$mailfile"
205			rm ${mailfile}
206	ccflib	1.10	exit
207			fi
208	ccflib	1.1
209	ccflib	1.13	# 2. Sets SAS_CCFPATH and initialises HEADAS and SAS depending on host
210	ccflib	1.1
211			case "$host" in
212			xvsoc01\|xmm)
213	ccflib	1.5	export SAS_CCFPATH="/data/xmm/ccflib/ftp-area/constituents"
214			export SAS_DIR=/data/xmm/ccflib/sas
215			export SAS_PATH=$SAS_DIR
216	ccflib	1.1	source $SAS_DIR/sas-setup.sh
217			;;
218			sasbld01\|sasbld02)
219	ccflib	1.5	export SAS_CCFPATH="/home/ccflib/ftp-area/constituents"
220	ccflib	1.1	/sas/bin/confsas
221			export HEADAS=/sasbuild/local/${host}/headas/architecture
222			. $HEADAS/headas-init.sh
223	ccflib	1.7	# To be able to mix several jobs on the same ccflib account
224			[ ! -d "${HOME}/pfiles/${host}" ] && mkdir ${HOME}/pfiles/${host}
225			export PFILES="${HOME}/pfiles/${host};${HEADAS}/syspfiles"
226			echo -n "HEADAS version: "
227			fversion
228	ccflib	1.1	source $HOME/setsas.sh 1> /dev/null
229	ccflib	1.7	echo "SAS Version: "
230			sasversion -V 1
231	ccflib	1.1	export SAS_VERBOSITY=0
232			;;
233	ccflib	1.5	scigrid6\|cn-*)
234			export SAS_CCFPATH="/home/ccflib/ftp-area/constituents"
235			/sas/bin/confsas
236			export HEADAS=/sasbuild/local/sasbld02/headas/architecture
237			. $HEADAS/headas-init.sh
238	ccflib	1.7	# To be able to mix several jobs on the same ccflib account
239			[ ! -d "${HOME}/pfiles/${host}" ] && mkdir ${HOME}/pfiles/${host}
240			export PFILES="${HOME}/pfiles/${host};${HEADAS}/syspfiles"
241			echo -n "HEADAS version: "
242			fversion
243	ccflib	1.5	source $HOME/setsas.sh 1> /dev/null
244	ccflib	1.7	echo "SAS Version: "
245			sasversion -V 1
246	ccflib	1.5	export SAS_VERBOSITY=0
247			;;
248			*) echo "Error: Do not know how to do it in host $host" ; exit ;;
249	ccflib	1.1	esac
250
251	ccflib	1.13	# 3. Finds the latest MIF issue
252	ccflib	1.1
253			find_latest_mif "${SAS_CCFPATH}"
254
255
256	ccflib	1.13	# 4. Scans the list of OBDS ID registered in the previous list to get the start time
257			# Then runs cifbuild to get the respective CIF.
258			# all_ccfs_${now}.txt is filled recursively on each iteration. Therefore we start
259			# with an empty file.
260
261			# Output file : ${VALID_CCF}/all_ccfs_${now}.txt
262	ccflib	1.1
263	ccflib	1.3	touch ${VALID_CCF}/all_ccfs_${now}.txt
264	ccflib	1.2
265	ccflib	1.1	n=0
266	ccflib	1.2
267	ccflib	1.1	while read line
268			do
269			obsid=`echo $line \| awk -F"\|" '{print $2}'`
270			stime=`echo $line \| awk -F"\|" '{print $9}'`
271			stime=`echo $stime \| tr " " "T"`
272			n=$((n+1))
273			echo "($n) Processing $obsid $stime" ; echo
274
275			# Run cifbuild
276
277			cif_file=${VALID_CCF}/${obsid}.cif
278
279			cifbuild --withmasterindexset='yes' \
280			--masterindexset=${MIF} \
281			--withobservationdate='yes' \
282			--observationdate=${stime} \
283			--analysisdate='now' \
284			--calindexset=${cif_file}
285
286
287			# Gets the list of CCFs included in the CIF
288
289			get_ccf_list "${cif_file}" > ${VALID_CCF}/${obsid}_ccfs.tmp
290
291			while read line
292			do
293			[ "$line" = "" ] && continue
294			class=`echo $line \| awk -F" " '{print $1"_"$2}'`
295			issue=`echo $line \| awk -F" " '{print $3}'`
296			issue=`printf "%04d" ${issue}`
297			echo ${class}_${issue}.CCF >> ${VALID_CCF}/${obsid}_ccfs.txt
298	ccflib	1.2
299	ccflib	1.1	done < ${VALID_CCF}/${obsid}_ccfs.tmp
300
301			rm ${VALID_CCF}/${obsid}_ccfs.tmp
302
303	ccflib	1.3	mv ${VALID_CCF}/all_ccfs_${now}.txt ${VALID_CCF}/all_ccfs_${now}.tmp
304	ccflib	1.2
305	ccflib	1.3	cat ${VALID_CCF}/${obsid}_ccfs.txt ${VALID_CCF}/all_ccfs_${now}.tmp \| sort -u > ${VALID_CCF}/all_ccfs_${now}.txt
306	ccflib	1.1
307			rm ${cif_file}
308			rm ${VALID_CCF}/${obsid}_ccfs.txt
309	ccflib	1.3	rm ${VALID_CCF}/all_ccfs_${now}.tmp
310	ccflib	1.1
311	ccflib	1.7	done < ${VALID_CCF}/xsaobslog_${now}.txt
312	ccflib	1.2
313	ccflib	1.13	# 5. Make a table of classes and issues with the style "Pipeline Release Notes"
314			# To get a classification, we need first to obtain all available classes.
315			#
316
317	ccflib	1.2
318			# Lists all CCF classes
319
320			ccf_classes="${VALID_CCF}/ccf_classes.txt"
321
322			while read line
323			do
324			class=`echo $line \| awk -F"_" '{print $1"_"$2}'`
325			echo $class >> ${ccf_classes}
326	ccflib	1.3	done < ${VALID_CCF}/all_ccfs_${now}.txt
327	ccflib	1.2
328			cat ${ccf_classes} \| sort -u > ${VALID_CCF}/kk.txt
329			mv ${VALID_CCF}/kk.txt ${ccf_classes}
330
331	ccflib	1.13
332
333	ccflib	1.3	# Output final file is named all_ccfs_${now}_table.txt
334
335			total_number_of_ccfs=0
336	ccflib	1.2
337	ccflib	1.7	all_ccfs_table="${VALID_CCF}/all_ccfs_${now}_table.txt"
338	ccflib	1.2
339			[ -f "${all_ccfs_table}" ] && rm ${all_ccfs_table}
340
341	ccflib	1.7	echo "Table of valid CCFs at $now_table" >> ${all_ccfs_table}
342			echo >> ${all_ccfs_table}
343			echo "\|================================\|=============\|=======\|" >> ${all_ccfs_table}
344			echo "\| Calibration File \| Issue range \| Count \|" >> ${all_ccfs_table}
345			echo "\|================================\|=============\|=======\|" >> ${all_ccfs_table}
346	ccflib	1.2
347			while read ccf_class
348	ccflib	1.3	do
349			echo -n "Processing class $ccf_class ..."
350	ccflib	1.2	issues_file="${VALID_CCF}/ccf_issues_for_${ccf_class}.txt"
351			[ -f "${issues_file}" ] && rm ${issues_file}
352			while read line
353			do
354			class=`echo $line \| awk -F"_" '{print $1"_"$2}'`
355			[ "$class" != "$ccf_class" ] && continue
356			issue=`echo $line \| awk -F"_" '{print $3}' \| cut -d. -f1`
357			echo $issue >> ${issues_file}
358	ccflib	1.3	done < ${VALID_CCF}/all_ccfs_${now}.txt
359	ccflib	1.2
360			cat ${issues_file} \| sort -u > kk.txt
361			mv kk.txt ${issues_file}
362	ccflib	1.3	real_number_of_issues_for_this_class=`wc -l ${issues_file} \| awk -F" " '{print $1}'`
363	ccflib	1.2
364			first_issue=`head -1 ${issues_file}`
365			last_issue=`tail -1 ${issues_file}`
366
367	ccflib	1.3	li=$((10#$last_issue))
368			fi=$((10#$first_issue))
369
370	ccflib	1.7	sequential_number_of_issues_for_this_class=$((li - fi + 1))
371	ccflib	1.8
372			asterisk=" "
373			[ "${real_number_of_issues_for_this_class}" -lt "${sequential_number_of_issues_for_this_class}" ] && asterisk="(*)"
374
375	ccflib	1.7	total_number_of_ccfs=$((real_number_of_issues_for_this_class + total_number_of_ccfs))
376
377			rn=$real_number_of_issues_for_this_class
378	ccflib	1.3
379	ccflib	1.8	if [ "${first_issue}" != "${last_issue}" ] ; then
380			if [ "$asterisk" = "(*)" ] ; then
381			printf "\| %-30s \| %4s-%4s(*)\| %4s \|\n" ${ccf_class} ${first_issue} ${last_issue} ${rn} >> ${all_ccfs_table}
382			else
383			printf "\| %-30s \| %4s-%4s \| %4s \|\n" ${ccf_class} ${first_issue} ${last_issue} ${rn} >> ${all_ccfs_table}
384			fi
385			else
386			printf "\| %-30s \| %4s \| %4s \|\n" ${ccf_class} ${first_issue} ${rn} >> ${all_ccfs_table}
387			fi
388
389	ccflib	1.7
390			echo "done"
391	ccflib	1.2	done < ${ccf_classes}
392
393	ccflib	1.7	echo "\|================================\|=============\|=======\|" >> ${all_ccfs_table}
394			echo >> ${all_ccfs_table}
395			echo "(*): Incomplete range." >> ${all_ccfs_table}
396			echo "" >> ${all_ccfs_table}
397			echo "Total number of valid CCFs required : ${total_number_of_ccfs}" >> ${all_ccfs_table}
398	ccflib	1.3	rm ${VALID_CCF}/ccf_classes.txt
399			rm ${VALID_CCF}/ccf_issues_for*.txt
400	ccflib	1.11
401	ccflib	1.13
402
403			# 6. Fill in the Valid CCF Set dir with the proper CCFs
404	ccflib	1.11
405	ccflib	1.12	fillvalidccfdir "all_ccfs_${now}.txt"
406	ccflib	1.13
407			[ -f "${mailfile}" ] && rm -rf ${mailfile}
408			echo "Valid CCF Set successfully copied to ${VALIDCONSTITUENTSDIR}" >> $mailfile
409			echo "Valid CCF Set successfully copied to ${VALIDCCFDIRINTRANET}" >> $mailfile
410			mailnotify "mvloccf: Valid CCF Set created successfully" $mailfile
411			rm ${mailfile}