Testing testpyrgsimplot ... FAILED Message: will run ./testpyrgsimplot for no longer than 600 seconds. ============================= test session starts ============================== platform linux -- Python 3.12.4, pytest-8.3.3, pluggy-1.5.0 -- /sasbuild/tools/python-3.12.4/bin/python3 cachedir: .pytest_cache rootdir: /workspaces/xmm_sas/packages/pyrgsimplot plugins: anyio-4.6.2.post1 collecting ... collected 7 items test_pyrgsimplot.py::test_set_ylabel PASSED [ 14%] test_pyrgsimplot.py::test_set_xlabel PASSED [ 28%] test_pyrgsimplot.py::test_get_observation_details PASSED [ 42%] test_pyrgsimplot.py::test_general_pdf FAILED [ 57%] test_pyrgsimplot.py::test_general_png PASSED [ 71%] test_pyrgsimplot.py::test_general_pdf2 PASSED [ 85%] test_pyrgsimplot.py::test_general_png2 PASSED [100%] =================================== FAILURES =================================== _______________________________ test_general_pdf _______________________________ def test_general_pdf(): spatialset = 'test_data/RGS/spatial_r1.fits' endispset = 'test_data/RGS/pi_r1.fits' srclist = 'test_data/RGS/srclistr1.FIT' # rgsimplot spatialset=test_data/RGS/spatial_r1.fits endispset=test_data/RGS/pi_r1.fits srclistset=test_data/RGS/srclistr1.FIT srcidlist=3 withspatialset=yes withendispset=yes withspatialregionset=yes withendispregionset=yes orderlist=1,2 colourmap=plasma plotfile=test_plot norm=log dict_values = dict() dict_values.update({'device' : 'no'}) dict_values.update({'spatialset' : spatialset}) dict_values.update({'endispset' : endispset}) dict_values.update({'srcidlist' : 3}) dict_values.update({'srclistset' : srclist}) dict_values.update({'withspatialset' : 'yes'}) dict_values.update({'withendispset' : 'yes'}) dict_values.update({'withspatialregionsets' : 'yes'}) dict_values.update({'dark_mode' : 'no'}) dict_values.update({'withendispregionsets' : 'yes'}) dict_values.update({'orderlist' : '1,2'}) dict_values.update({'colour' : 'plasma'}) dict_values.update({'plotfile' : 'test_plot.pdf'}) dict_values.update({'colourmap' : 'pow'}) dict_values.update({'gamma' : 0.5}) dict_values.update({'inverted' : 'no'}) > rgsimplot.run(dict_values) test_pyrgsimplot.py:62: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../../lib/python/pysas/pyrgsimplot/pyrgsimplot.py:456: in run status = sasplt.merge_pdf(pdf_files, plot_title + '.{}'.format(out_format)) ../../../lib/python/pysas/pysasplot_utils/pysasplot_utils.py:678: in merge_pdf merger = PdfMerger() /sasbuild/tools/python-3.12.4/lib/python3.12/site-packages/pypdf/_merger.py:42: in __init__ deprecation_with_replacement("PdfMerger", "PdfWriter", "5.0.0") /sasbuild/tools/python-3.12.4/lib/python3.12/site-packages/pypdf/_utils.py:384: in deprecation_with_replacement deprecation( _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ msg = 'PdfMerger is deprecated and was removed in pypdf 5.0.0. Use PdfWriter instead.' def deprecation(msg: str) -> None: > raise DeprecationError(msg) E pypdf.errors.DeprecationError: PdfMerger is deprecated and was removed in pypdf 5.0.0. Use PdfWriter instead. /sasbuild/tools/python-3.12.4/lib/python3.12/site-packages/pypdf/_utils.py:371: DeprecationError ----------------------------- Captured stdout call ----------------------------- Executing /workspaces/xmm_sas/lib/python/pysas/pyrgsimplot/pyrgsimplot.py {'device': 'no', 'spatialset': 'test_data/RGS/spatial_r1.fits', 'endispset': 'test_data/RGS/pi_r1.fits', 'srcidlist': 3, 'srclistset': 'test_data/RGS/srclistr1.FIT', 'withspatialset': 'yes', 'withendispset': 'yes', 'withspatialregionsets': 'yes', 'dark_mode': 'no', 'withendispregionsets': 'yes', 'orderlist': '1,2', 'colour': 'plasma', 'plotfile': 'test_plot.pdf', 'colourmap': 'pow', 'gamma': 0.5, 'inverted': 'no'} ----------------------------- Captured stderr call ----------------------------- QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-sasbuild' ------------------------------ Captured log call ------------------------------- INFO pyrgsimplot:logger.py:158 Starting processing the spatial energy block... DEBUG pyrgsimplot:logger.py:158 Running getobservationdetails... DEBUG pyrgsimplot:logger.py:158 Running getarrayattributes... DEBUG pyrgsimplot:logger.py:158 Collecting the spatial regions... DEBUG pyrgsimplot:logger.py:158 Spatial regions collected. INFO pyrgsimplot:logger.py:158 Plotting /workspaces/xmm_sas/packages/pyrgsimplot/test/test_plot. DEBUG pyrgsimplot:logger.py:158 Evaluating the coordinates of the source list... DEBUG pyrgsimplot:logger.py:158 Transforming unit... DEBUG pyrgsimplot:logger.py:158 Transforming unit... DEBUG pyrgsimplot:logger.py:158 Transforming unit... DEBUG pyrgsimplot:logger.py:158 Transforming unit... DEBUG pyrgsimplot:logger.py:158 Transforming unit... DEBUG pyrgsimplot:logger.py:158 Transforming unit... DEBUG pyrgsimplot:logger.py:158 Saving /workspaces/xmm_sas/packages/pyrgsimplot/test/test_plot_spatial pdf. INFO pyrgsimplot:logger.py:158 Created /workspaces/xmm_sas/packages/pyrgsimplot/test/test_plot_spatial. INFO pyrgsimplot:logger.py:158 Starting energy dispersion block... DEBUG pyrgsimplot:logger.py:158 Running getobservationdetails... DEBUG pyrgsimplot:logger.py:158 Running getarrayattributes... DEBUG pyrgsimplot:logger.py:158 Selecting regions for energy dispersion plot... DEBUG pyrgsimplot:logger.py:158 Energy dispersion regions collected. INFO pyrgsimplot:logger.py:158 Plotting /workspaces/xmm_sas/packages/pyrgsimplot/test/test_plot. DEBUG pyrgsimplot:logger.py:158 Evaluating the coordinates of the source list... DEBUG pyrgsimplot:logger.py:158 Transforming unit... DEBUG pyrgsimplot:logger.py:158 Transforming unit... DEBUG pyrgsimplot:logger.py:158 Transforming unit... DEBUG pyrgsimplot:logger.py:158 Transforming unit... DEBUG pyrgsimplot:logger.py:158 Transforming unit... DEBUG pyrgsimplot:logger.py:158 Transforming unit... DEBUG pyrgsimplot:logger.py:158 Saving /workspaces/xmm_sas/packages/pyrgsimplot/test/test_plot_endisp pdf. INFO pyrgsimplot:logger.py:158 Created /workspaces/xmm_sas/packages/pyrgsimplot/test/test_plot_endisp. DEBUG pyrgsimplot:logger.py:158 Merging PDFs... (['/workspaces/xmm_sas/packages/pyrgsimplot/test/test_plot_spatial.pdf', '/workspaces/xmm_sas/packages/pyrgsimplot/test/test_plot_endisp.pdf', '/workspaces/xmm_sas/packages/pyrgsimplot/test/test_plot2.pdf']). =============================== warnings summary =============================== test/test_pyrgsimplot.py::test_general_pdf test/test_pyrgsimplot.py::test_general_pdf test/test_pyrgsimplot.py::test_general_png test/test_pyrgsimplot.py::test_general_png test/test_pyrgsimplot.py::test_general_pdf2 test/test_pyrgsimplot.py::test_general_png2 /sasbuild/tools/python-3.12.4/lib/python3.12/site-packages/astropy/wcs/wcs.py:537: FITSFixedWarning: RADECSYS= 'FK5 ' / stellar reference frame used the RADECSYS keyword is deprecated, use RADESYSa. wcsprm = _wcs.Wcsprm( test/test_pyrgsimplot.py::test_general_pdf test/test_pyrgsimplot.py::test_general_pdf test/test_pyrgsimplot.py::test_general_png test/test_pyrgsimplot.py::test_general_png test/test_pyrgsimplot.py::test_general_pdf2 test/test_pyrgsimplot.py::test_general_png2 /sasbuild/tools/python-3.12.4/lib/python3.12/site-packages/astropy/wcs/wcs.py:805: FITSFixedWarning: 'datfix' made the change 'Set MJD-OBS to 57043.387106 from DATE-OBS. Set MJD-END to 57045.000741 from DATE-END'. warnings.warn( test/test_pyrgsimplot.py::test_general_pdf test/test_pyrgsimplot.py::test_general_png test/test_pyrgsimplot.py::test_general_pdf2 /sasbuild/tools/python-3.12.4/lib/python3.12/site-packages/astropy/units/core.py:2158: UnitsWarning: 'PI' did not parse as fits unit: At col 0, Unit 'PI' not supported by the FITS standard. Did you mean pix? If this is meant to be a custom unit, define it with 'u.def_unit'. To have it recognized inside a file reader or other code, enable it with 'u.add_enabled_units'. For details, see https://docs.astropy.org/en/latest/units/combining_and_defining.html warnings.warn(msg, UnitsWarning) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED test_pyrgsimplot.py::test_general_pdf - pypdf.errors.DeprecationError:... ================== 1 failed, 6 passed, 15 warnings in 16.49s =================== Error while running ./testpyrgsimplot ERROR: one of the tests failed